Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1530 ATGCTTGAAATTCGCATTCTCTCGCATCGCACTCCACCTCAATCTAACTCAAACCCGCTTTCTCCCCTTTTTATCACCTCTTCTTCTTCTTATTCTTCTGCTCCAGCTCGGCGTCGCTTGAAGAGCACCGCTAATCCGCGTAAAAAGAACCTTAAGTGCCTTACTTCTCGTATTGTCCAACTCACCCACCGAAGGCAGCTTCACCAAATTTTTCAAGAGATTGACATTGCCAAGAAACGTTATGGGAGGTTGAACACAATTGTCATGAACGCGGTCATGGAGGCCTGTGTTCATTGCGGTGATATTGATTCAGCTCTTAGGATATTTGATGAGATGACAAAACCGGGGAGCTGTGGCGTGGATACTGTCACGTATGCCACGCTTTTGAAGGGATTAGGCGAGTTGCGGAAAGTTGATGAAGCCTTTCAAATGCTTGAATCCGTGGAAAAAGGTATCGCACCTGGAAATCCAAAGCTGTCAGTATCATTGATCTTTGGTCTGCTAAATGCCATAATCGAAGCAGGAGACTTACGTCGTGCCAATGGCCTCCTTGCTCGTTATGGTTATGTATTTCGTGAAGGTGGCAATTTCTCAGTCTCAGTATACAACTTACTCATAAAGGGGTATATCACCGCAGGTTTTCCTCTAGATGCCGTAAACTTGCACAATGAAATGTTACGTCATGGAATGAAGCCTGATCGGCTCACCTACAACTCTCTCATATTAGCATGTGTCAAGAGTCAAGACATGGATACTGCTATGCAATTTTTTGAAAACATGAAGAATGAAGCACAGAAATCTACCCACAATGCCGTTTTGCCAGATATTGTCACATATACGACACTGCTCAAGGGTTTTGGACAGGCCAAAGATCTCTTGTCAGTCCTGAAAATAGTGCTGGAAATGAAATCGTGTCAGGAATTGTATATTGATCGAACTGCTTACACCGCAATGATTGATGCTTTATTAAACTGTGGCTCAATTAAGGGTGCTCAATGCATCTTTGGAGAAATACTGAAGCTGGCTGGTTGGAATCCAGAGTTGAGGCCCAAGCCTCACCTTTATCTTTCCATGATGCGTGCTTTTGCCTCTAGAGGAGATTACAATGTAGTCAAAAACTTGCATAGGCGGCTTTTGCCAGATTCTGCAGGAACCATCTTGTCAGTTGCCCAAAAAGAAGCTGATCATCTTCTCATGGAAGCAGCACTGAATAGTGATCAGGTTGATGTTGCCATTGAAACTCTTACTACTATTGCTTCAAAATGGAAGGGTATATCATGGACAAGTCGTGGAGGCATGGTGACTCTGCGCATTGAGGCCACATTGGGATTCTCAAAATCCATATTCAGTCCTTACCTACTTCCACAGGTTTCACCTGCTGAACCAGTTGAGAGATTCATGTTGCCATTTGAAGCAATAGGACCACTGCAAGGCACTGTACCATTGAAGGAAGTGGTTATGCGTTTCTTTGATGATCCAGTTGTTCCAATAGTAGATGATTGGGGCAGCTGTATAGGATTGGTGCACCGTGAAGACTGCACTCAGTTGGACTTGAATGCTTCGCTTTCAACAATGATGAGAAGCCCGCCTCCCACTGTTACAACTACAACATCAGTTGGTCATGTTGTCGATTTGATTTTGGAGAAGGGCTACCAAATGGTTATCATTGTAAAGTACACCAGCTCATACGGTACCGCATACAACTCAAGGGCAGTTGGAGTTTTTACATCACAACAATTGTATAGGTTTATCACACCTGCATTTGAATCACTAGGGCCAAAACTTTCAATCTTTAGAAGATAA 1803 0.4359 MLEIRILSHRTPPQSNSNPLSPLFITSSSSYSSAPARRRLKSTANPRKKNLKCLTSRIVQLTHRRQLHQIFQEIDIAKKRYGRLNTIVMNAVMEACVHCGDIDSALRIFDEMTKPGSCGVDTVTYATLLKGLGELRKVDEAFQMLESVEKGIAPGNPKLSVSLIFGLLNAIIEAGDLRRANGLLARYGYVFREGGNFSVSVYNLLIKGYITAGFPLDAVNLHNEMLRHGMKPDRLTYNSLILACVKSQDMDTAMQFFENMKNEAQKSTHNAVLPDIVTYTTLLKGFGQAKDLLSVLKIVLEMKSCQELYIDRTAYTAMIDALLNCGSIKGAQCIFGEILKLAGWNPELRPKPHLYLSMMRAFASRGDYNVVKNLHRRLLPDSAGTILSVAQKEADHLLMEAALNSDQVDVAIETLTTIASKWKGISWTSRGGMVTLRIEATLGFSKSIFSPYLLPQVSPAEPVERFMLPFEAIGPLQGTVPLKEVVMRFFDDPVVPIVDDWGSCIGLVHREDCTQLDLNASLSTMMRSPPPTVTTTTSVGHVVDLILEKGYQMVIIVKYTSSYGTAYNSRAVGVFTSQQLYRFITPAFESLGPKLSIFRR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1530 600 Pfam CBS domain 525 584 IPR000644 -
Lele27g1530 600 TIGRFAM PPR: pentatricopeptide repeat domain 236 262 IPR002885 -
Lele27g1530 600 TIGRFAM PPR: pentatricopeptide repeat domain 201 233 IPR002885 -
Lele27g1530 600 TIGRFAM PPR: pentatricopeptide repeat domain 89 113 IPR002885 -
Lele27g1530 600 TIGRFAM PPR: pentatricopeptide repeat domain 123 147 IPR002885 -
Lele27g1530 600 TIGRFAM PPR: pentatricopeptide repeat domain 277 305 IPR002885 -
Lele27g1530 600 SUPERFAMILY CBS-domain pair 467 584 IPR046342 -
Lele27g1530 600 MobiDBLite consensus disorder prediction 1 22 - -
Lele27g1530 600 Gene3D Tetratricopeptide repeat domain 270 445 IPR011990 GO:0005515
Lele27g1530 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Lele27g1530 600 Pfam PPR repeat 314 340 IPR002885 -
Lele27g1530 600 ProSiteProfiles CBS domain profile. 525 590 IPR000644 -
Lele27g1530 600 Pfam PPR repeat family 199 245 IPR002885 -
Lele27g1530 600 Pfam PPR repeat family 85 132 IPR002885 -
Lele27g1530 600 Gene3D Tetratricopeptide repeat domain 38 151 IPR011990 GO:0005515
Lele27g1530 600 Gene3D Tetratricopeptide repeat domain 166 269 IPR011990 GO:0005515
Lele27g1530 600 Pfam Pentatricopeptide repeat domain 272 303 IPR002885 -
Lele27g1530 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Lele27g1530 600 PANTHER OS09G0431600 PROTEIN 25 589 IPR044781 -
Lele27g1530 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Lele27g1530 600 Gene3D - 486 585 IPR046342 -
Lele27g1530 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 151 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1530 Lele-ChrLele27 21218235 21222487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1530 85 421 Glycosyltransferase AT1G05670 24.706 6.11e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0547 25 3475106 3479426 Lele27g1530 27 21218235 21222487 hybridization
Lele26g0563 26 3576790 3582398 Lele27g1530 27 21218235 21222487 hybridization