Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1493 ATGATTTTCCATAATTCTCGTCATGTACTCTTCTTAGTTCGTCCTCTGTTGCTAAGGCCAAAGCTTCTTCCATTCCTTAGAGCGCGAAATCAACGCTTCTTTTCCTCTTCGGCACAATCATCGCTATATATGCCGGTTAGCTATGTCATCGATTGGCCATTACTACCAATCCCAGAACGCAACCCAAACCCCAACCCGAAATCGAACGCAGTCTCTAACTTCTCGCTGGATGACTTCTCCACCATTGCCAATCTCTTTGTCGACAGTTCCATTTCTCAGGGTCCAGCTCTAGATAATGCACTCAATGGGGCCGGAATTGAACCGGATCCGACTCTGCTGCAAGCGTTATTCGATCATTTCGATTCTTCCCCAAAGTTACTACACTCGCTGTTTCTTTGGGCTCAGAAGCGACCAGGGTTCAGGCCCAGTGTGACGCTTTTCAACTCTATGATCAACGTTCTTGCCAGATCGAGGGAGTTTGACTCCGCTTGGATTTTGATTCTTGAACGGATTGATCGGCACGAGGAAGCCATCTTCCTTTCCGTGGATACTTTTGCTATAATGATCAGACGGTATGCAGTTGCAGGTATGTCACAACCTGCAATTCGATCATTTGAGTATGCTAGAAATTTAAAGCCAATTATGGATTCGGATTCAGAAATGAGATTGTTTGAAATATTGTTGGATTCACTTTGTAAAGAAGGGTCAGTCAGAGCAGCTTCAGAGTATTTCCTTCAGAAAAAGATGGACCCATCTTGGGTCCCATCAGTTCGGATTTATAATATTATGCTAAATGGATGGTTTCGATCTAGGAAACTCAAACATGCTGAGAGATTTTGGGTAGAGATGAAGAAGGAGAATGTAAGACCAAGTGTGGTGACTTATGGCACCCTTGTGGAAGGATATTGCAGGATGCGTCGTGTTGAAAAGGCAATTGAATTGGTTAATGATATGACCAAACAAGGAATTGAACCGAATGCAATTGTGTATAATCCAATAATCGATGCATTAGCAGAGGCTGGGAGATTCAAAGAGGCTTTGGGGATGTTGGAGCGTTTTCTTGTCTTAGAAACAGGCCCAACTAACTCAACTTACAATTCTTTGGTGAAGGGATATTGTAAGGCAGGAGATCTTCTTGGTGCCAGTGAGATTCTTAAGATGATGATAAGTAGGGGTTTCATCCCCAGTCCCACCACCTATAACTACTTCTTTAGGTACTTTTCAAGGTGTAGGAAAGTTGATGAGGGTATGAACCTTTATACCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTACCATCTTTTACTGAAGATGCTATGTGAAGAGGGGAAATTGAACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATGCGGGATATGACATGGACCTTGCCACAAGTACTATGTTGGTTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACATTTCAGAGAATGAATAGTGAATTAAAGAAGCGAGGGATGATTGAAATGGCACGAAAACTATGCAGCTTGATGTCTTCTGTTCCTCATTCTACTAAGTTGCCAAATACATATGTTGAAGACATAGATGAAGCTCATGCCCGGAGACAATCTATAATGCAGAAGGCCAAAGCATTTTCTGATATGCTGAAAAACATCAAGGACCCCAGAGAACTTGCCAAATACAGAAGCTCATCAGAAAATGCTGTTTCCAGCGCTGAGTGTTTGATGGATAATATTAAGAAAAGGATAAAGAAGCCATGA 1812 0.4233 MIFHNSRHVLFLVRPLLLRPKLLPFLRARNQRFFSSSAQSSLYMPVSYVIDWPLLPIPERNPNPNPKSNAVSNFSLDDFSTIANLFVDSSISQGPALDNALNGAGIEPDPTLLQALFDHFDSSPKLLHSLFLWAQKRPGFRPSVTLFNSMINVLARSREFDSAWILILERIDRHEEAIFLSVDTFAIMIRRYAVAGMSQPAIRSFEYARNLKPIMDSDSEMRLFEILLDSLCKEGSVRAASEYFLQKKMDPSWVPSVRIYNIMLNGWFRSRKLKHAERFWVEMKKENVRPSVVTYGTLVEGYCRMRRVEKAIELVNDMTKQGIEPNAIVYNPIIDALAEAGRFKEALGMLERFLVLETGPTNSTYNSLVKGYCKAGDLLGASEILKMMISRGFIPSPTTYNYFFRYFSRCRKVDEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEGKLNLAVQVSKEMRHAGYDMDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQRMNSELKKRGMIEMARKLCSLMSSVPHSTKLPNTYVEDIDEAHARRQSIMQKAKAFSDMLKNIKDPRELAKYRSSSENAVSSAECLMDNIKKRIKKP 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1493 603 Pfam PPR repeat 147 166 IPR002885 -
Lele27g1493 603 Pfam PPR repeat 434 462 IPR002885 -
Lele27g1493 603 Pfam PPR repeat 470 498 IPR002885 -
Lele27g1493 603 Pfam PPR repeat 259 288 IPR002885 -
Lele27g1493 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Lele27g1493 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Lele27g1493 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Lele27g1493 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Lele27g1493 603 TIGRFAM PPR: pentatricopeptide repeat domain 434 466 IPR002885 -
Lele27g1493 603 TIGRFAM PPR: pentatricopeptide repeat domain 471 500 IPR002885 -
Lele27g1493 603 TIGRFAM PPR: pentatricopeptide repeat domain 328 352 IPR002885 -
Lele27g1493 603 TIGRFAM PPR: pentatricopeptide repeat domain 364 396 IPR002885 -
Lele27g1493 603 TIGRFAM PPR: pentatricopeptide repeat domain 399 431 IPR002885 -
Lele27g1493 603 TIGRFAM PPR: pentatricopeptide repeat domain 259 291 IPR002885 -
Lele27g1493 603 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Lele27g1493 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Lele27g1493 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Lele27g1493 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Lele27g1493 603 Pfam PPR repeat family 361 405 IPR002885 -
Lele27g1493 603 Pfam PPR repeat family 290 338 IPR002885 -
Lele27g1493 603 SUPERFAMILY HCP-like 255 464 - -
Lele27g1493 603 Gene3D Tetratricopeptide repeat domain 389 460 IPR011990 GO:0005515
Lele27g1493 603 Gene3D Tetratricopeptide repeat domain 247 318 IPR011990 GO:0005515
Lele27g1493 603 Gene3D Tetratricopeptide repeat domain 319 388 IPR011990 GO:0005515
Lele27g1493 603 Gene3D Tetratricopeptide repeat domain 112 246 IPR011990 GO:0005515
Lele27g1493 603 Gene3D Tetratricopeptide repeat domain 461 531 IPR011990 GO:0005515
Lele27g1493 603 PANTHER ATPASE EXPRESSION PROTEIN 3 100 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1493 Lele-ChrLele27 20954396 20956534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1493 117 547 Glycosyltransferase AT1G05670 25.942 2.21e-42 161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0587 25 3743535 3745686 Lele27g1493 27 20954396 20956534 hybridization
Lele26g0603 26 3846824 3849998 Lele27g1493 27 20954396 20956534 hybridization