Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1293 ATGGCTTCTCCTCCTCCGTCGTATCAGACAGATCTTCCTCTGCCCTCTGCCTCTCAAACTGGTGACAAGCTTCCGGATCATGAAGATCGTTCAACTTCGGTTCCAATCCATATTGTCACCAGTGCATCTCAACTTCCAGTTGAATTCCTCGAACCCTCACCTCAAAAGCTACTCGTCATTGGTTTCGACTGTGAGGGTGTCGACTTGTGTCGTTATGGGGCTCTCTGTATAATGCAGCTTGCGTTTCCTGATGCTATATACCTGGTTGATGCAATCCAAGGGGGAGAGACGCTTATGAGAGCCTGCAAGCCTGCACTTGAGTCTAGTTACATAAAAAAGGTGATTCATGATTGCAAACGAGACAGTGAGGCATTGTATTTTCAATTTGGCATCAAGTTGAACAACGTGATGGATACCCAGATTGCTTATTCACTGATAGAGGAGCAAGAAGGACGGAAGAGATTGCCGGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCATATTATTGTGGTATATCATATGATGAGAAAGAAGAAGTTCGTATCCTCCTTCGGCAGGACCCCAAGTTTTGGACATACAGACCGTTATCTGAACAAATGGTCCGTGCAGCTGCTGATGATGTTTGCTTTCTTCTCTACATTTATCACCAGATGATGGAGAAATTAAGTGAGCGGTCTCTATGGTATCTTGCAGTCCGTGGTGCCCTCTATTGCCGATGCTTTTGTGTCAATGACAACGATTATGCGGACTGGCCATCTCTGCCTCCTATCCCAGATATGTTGACAGTTGATGGAGACGCTCCCGAGGAAGAAATCCTTTCAGTTCTTGATGTTCCCCAAGGAAAGATGGGACGCGTTATTGGGAGAAAAGGGGCGTCAATTTTGTCAATTAAGGAGTCCTGCGAGGCGCAAATTCTCATTGAAGGTGCGAAGGGCCCACCTGATAAGGTTTTTATCATGGGACCAGTGAAGCAGGTGAGGAAAGCAGAGGCCATGTTAAGGGGCAGAATGTTGGATGTGTACTGA 1032 0.4632 MASPPPSYQTDLPLPSASQTGDKLPDHEDRSTSVPIHIVTSASQLPVEFLEPSPQKLLVIGFDCEGVDLCRYGALCIMQLAFPDAIYLVDAIQGGETLMRACKPALESSYIKKVIHDCKRDSEALYFQFGIKLNNVMDTQIAYSLIEEQEGRKRLPDDYISFVGLLADPYYCGISYDEKEEVRILLRQDPKFWTYRPLSEQMVRAAADDVCFLLYIYHQMMEKLSERSLWYLAVRGALYCRCFCVNDNDYADWPSLPPIPDMLTVDGDAPEEEILSVLDVPQGKMGRVIGRKGASILSIKESCEAQILIEGAKGPPDKVFIMGPVKQVRKAEAMLRGRMLDVY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1293 343 PANTHER EGALITARIAN, ISOFORM B 19 340 - -
Lele27g1293 343 MobiDBLite consensus disorder prediction 1 30 - -
Lele27g1293 343 SUPERFAMILY Ribonuclease H-like 27 254 IPR012337 -
Lele27g1293 343 Pfam KH domain 278 336 IPR004088 GO:0003723
Lele27g1293 343 Gene3D - 2 239 IPR036397 GO:0003676
Lele27g1293 343 Pfam 3'-5' exonuclease 54 224 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele27g1293 343 SMART 35exoneu6 36 225 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele27g1293 343 SMART kh_6 272 340 IPR004087 GO:0003676
Lele27g1293 343 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 267 341 IPR036612 GO:0003723
Lele27g1293 343 CDD Egl_like_exo 49 244 - -
Lele27g1293 343 ProSiteProfiles Type-1 KH domain profile. 273 335 - -
Lele27g1293 343 CDD KH-I 278 335 - -
Lele27g1293 343 Gene3D K Homology domain, type 1 264 339 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1293 Lele-ChrLele27 19702986 19707011 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0782 25 4982867 4986939 Lele27g1293 27 19702986 19707011 hybridization
Lele26g0795 26 5044943 5049037 Lele27g1293 27 19702986 19707011 hybridization