Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1252 ATGAAGAACTCCGGCAACCACGTCGCCGTCGCCAGGTCCCCTGCCAAGTCTTCTTCAATGGATCACAAAATTTGGAGCAGGTTGCCGCCCGAACTGCTCGAGCTTATCCTCTCTTTACTCCCACTCAAAACCTTCTTGAATCTGAGATCCACTTGCAAGGCCTTCAGGTCTCTCATTTATTCTCCCCCATTCATCACCAAGCACTCATCATCATCATCATCTTCTTCTCCACCTTTCTCGTCGTTTTTCTTGTTGTCGCATCCCCAATTTCACCGTCAATTCCCTCTCTACGACTGTGTGCTTGGCACCTGGCGTGACGTCTCTCTTTCTTTCTCTGATTTATTTCACATCTCTGCGCACTCTTCTCTAGTCTCTTCCTCCGGTGGCCTCTTCTGTTTGTCCGACTTCAATTCATATTCCTTGCTTGTTTGCAACCTCTTGGCCAAATCCTCCAGAAAGATCGATCTTCCAACCCACTCTTACCGTTTGGAGCATCTTACTCTTGTCTCTACTGCTATCGGGTACAAGATATTCGTGCTTTCCTCTGAATCAGCCTCAAATAGTGCCTTCGTTTATGATTCAGTTGCGCTTTGTTGGGAAAGATTTGATTGTTCTGATTTGATTCTGAGCGACAATTATCACCAGCAAGGTGTCTTCTACAATGGCGGCTTGTACTTTACGACTCCAGAACCATTTTCAGTGGTTCGCTTTGATTTTGGGAGTGGAAAATGGAAGAGGCCCAATAGTTCACCACCGAGCCAACTCTCGTTTTTTCGATTGGTGAGTGACGGAGAGAAAATGCTATATCTTGTCGGTGGTATAGGAAACAATGGAATCTCAAGGAGCGTAAAGATTTGGGAAATGAGTGAATCGGGGAATTGGGTGGAAGTAGAGAAGTTGCCGGAGTTGATGTGCAGAAAATTTGTGTCGGTATGTTATCACAATTACGAGCATATTTATTGCTTCTGGCATCATGGAATGATCTGCATTTGCTGCTATACATGGCCTGAGATCTTGTATTTCAAAGTTTCAAGGAGGACTTGGCATTGGCTTCCCAGGTGCACCTCTTTGCCTGAGAAATGGAGCTGTGGGTTTAAGTGGTTCTCTTTTGTTCCTAAGCTATATGCTCTTGTATGA 1137 0.4521 MKNSGNHVAVARSPAKSSSMDHKIWSRLPPELLELILSLLPLKTFLNLRSTCKAFRSLIYSPPFITKHSSSSSSSSPPFSSFFLLSHPQFHRQFPLYDCVLGTWRDVSLSFSDLFHISAHSSLVSSSGGLFCLSDFNSYSLLVCNLLAKSSRKIDLPTHSYRLEHLTLVSTAIGYKIFVLSSESASNSAFVYDSVALCWERFDCSDLILSDNYHQQGVFYNGGLYFTTPEPFSVVRFDFGSGKWKRPNSSPPSQLSFFRLVSDGEKMLYLVGGIGNNGISRSVKIWEMSESGNWVEVEKLPELMCRKFVSVCYHNYEHIYCFWHHGMICICCYTWPEILYFKVSRRTWHWLPRCTSLPEKWSCGFKWFSFVPKLYALV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1252 378 ProSiteProfiles F-box domain profile. 22 68 IPR001810 GO:0005515
Lele27g1252 378 Pfam F-box domain 25 64 IPR001810 GO:0005515
Lele27g1252 378 FunFam F-box family protein 86 365 - -
Lele27g1252 378 Gene3D - 137 376 IPR015915 GO:0005515
Lele27g1252 378 SUPERFAMILY F-box domain 23 331 IPR036047 GO:0005515
Lele27g1252 378 SUPERFAMILY Kelch motif 87 356 IPR015915 GO:0005515
Lele27g1252 378 Gene3D - 12 64 - -
Lele27g1252 378 PANTHER BNACNNG10540D PROTEIN 4 376 - -
Lele27g1252 378 SMART fbox_2 28 68 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1252 Lele-ChrLele27 19364362 19365498 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0794 02 4849063 4849434 Lele27g1252 27 19364362 19365498 CCT
Lele03g0811 03 4763896 4766892 Lele27g1252 27 19364362 19365498 CCT
Lele25g0826 25 5321334 5322467 Lele27g1252 27 19364362 19365498 hybridization
Lele26g0836 26 5397517 5398653 Lele27g1252 27 19364362 19365498 hybridization