Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0811 ATGGACGACGAAACTCGCCGGATCTTCAACAAGTTCGACATTAACGGCGACGGCAAGATCTCCAGCTCTGAGCTGAAGAAGATGCTGCTCACACTTGACTCAAAAACCACGTCGAAGGAGATCAAGCGCATCATGGCCGAGCTTGACAAGAACGGCGACGGCTACATTGATCTCAAAGAGTTCGCCGACTTCCACCAATCTGGCGGAGAAAAGCTCGCCGACTCAACAGAGCTCCGTGATGCCTTTGATCTGTACGACTTGGACAAGAACGGACTAATCTCCGTCACTGAGTTGCATGCGGTGCTGCGAAAGTTAGGGGAGAAGAGATCCTTGAGCGACTGCCGGAAAATTATCAGTTCCGTCGACACCGACGGCGATGGTAACGTAAATTTCGAGGAGTTCAAGAGGATGATGACTCGCGCCTAG 426 0.5188 MDDETRRIFNKFDINGDGKISSSELKKMLLTLDSKTTSKEIKRIMAELDKNGDGYIDLKEFADFHQSGGEKLADSTELRDAFDLYDLDKNGLISVTELHAVLRKLGEKRSLSDCRKIISSVDTDGDGNVNFEEFKRMMTRA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0811 141 Pfam EF-hand domain pair 77 138 IPR002048 GO:0005509
Lele27g0811 141 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Lele27g0811 141 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Lele27g0811 141 Gene3D - 71 141 - -
Lele27g0811 141 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Lele27g0811 141 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Lele27g0811 141 SMART efh_1 40 68 IPR002048 GO:0005509
Lele27g0811 141 SMART efh_1 77 105 IPR002048 GO:0005509
Lele27g0811 141 SMART efh_1 4 32 IPR002048 GO:0005509
Lele27g0811 141 SMART efh_1 113 141 IPR002048 GO:0005509
Lele27g0811 141 CDD EFh 77 139 IPR002048 GO:0005509
Lele27g0811 141 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Lele27g0811 141 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Lele27g0811 141 CDD EFh 4 66 IPR002048 GO:0005509
Lele27g0811 141 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Lele27g0811 141 ProSiteProfiles EF-hand calcium-binding domain profile. 109 141 IPR002048 GO:0005509
Lele27g0811 141 SUPERFAMILY EF-hand 4 140 IPR011992 -
Lele27g0811 141 FunFam Calmodulin 1 1 141 - -
Lele27g0811 141 Gene3D - 1 70 - -
Lele27g0811 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 139 - -
Lele27g0811 141 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0811 Lele-ChrLele27 16165524 16165949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0811 3 139 EF-hand Containing Proteins AT1G18210 50.365 3.35e-45 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1273 25 8585625 8586050 Lele27g0811 27 16165524 16165949 CCT
Lele26g1278 26 8432210 8433907 Lele27g0811 27 16165524 16165949 CCT
Lele27g0818 27 16226922 16228502 Lele27g0811 27 16165524 16165949 CCT
Lele28g1270 28 8478871 8480400 Lele27g0811 27 16165524 16165949 CCT
Lele25g1273 25 8585625 8586050 Lele27g0811 27 16165524 16165949 hybridization