Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0040 ATGGATCCACATCGCCGCCGCCGCCTCCCTCCGGCCACCCCTCACGAAGGCTCAGCCTCTTCTCCCAATCTCCTCAAGAAGCCTTCCTCCGCCGTCGCCAACGGCGGCCGTCGAACCTCGTCTCCCACTCCTAAAGCTTCTGATGCCCTACCTCTGCCGCTGTACCTTACGAATGCTGTTTTCTTCACGCTCTTCTTCTCCGTAGCGTACTATCTCCTCCACCGCTGGCGTGACAAGATCCGCAACTCTACCCCTCTTCACGTTGTTACCTTGTCCGAGATTGCCGCCATTGTGTCCCTCATCGCGTCTTTTATTTACCTTCTCGGGTTTTTCGGCATTGACTTTGTACAGTCCTTCATTTCGCGTGCTTCTCACGATGTTTGGGACCTCGAGGACGATGCCGGCGAGGCCGATGCTGCTGCTGAGTCTCGTGCTCACAACCACCACCCCCGAAGTGATTTCGTCATCGAGCAACCGGTTCCTAAATTGATGGTGGATCCCGATCATTTAGTTTCGTCTATTTCCTCCGAGGAAGATGAGAAGATCGTACAGTCTGTGCTAGATGGTACGATTCCATCGTACTCACTCGAGTCCAAGCTCGGGGACTGTAAGCGGGCGGCGGCCATTCGACGTGAGGCCTTGCAGAAGATGACTGGGAGATCTCTCCAGGGATTACCGTTGGATGGGTTCGATTACGATTCAATTTTGGGGCAGTGCTGTGAAATGCCGGTAGGTTACGTACAAATTCCGGTGGGAGTAGCTGGGCCGTTGTTGCTTGATGGGTTTGAGTATACTGTACCAATGGCAACCACTGAGGGGTGCTTGGTGGCGAGCACGAACAGAGGTTGTAAAGCCATTTATGCTTCTGGTGGAGCTAACAGCATAGTGCTGAGGGATGGGATGACCAGAGCGCCTGTTGTAAGGTTCGCTACTGCCAAAAGGGCTGCGGAGTTGAAGTTCTATCTGGAAGATCCTCTCAATTTTGATACCTTGGCCGTCGTTTTTAATAGGTCAAGTAGATTTGCTAGGCTTCAAAGTATTCATTGTTCTATCGCTGGAAAGAACCTTTACATGAGATTCAGCTGTAGCACAGGTGATGCCATGGGGATGAACATGGTTTCCAAAGGCGTGCAGAATGTTCTTGATTTCCTTCAAAATGATTTCCCGGACATGGATGTTATTGGCATCTCTGGGAATTATTGTTCGGACAAGAAACCTGCTGCTGTAAATTGGATTGAGGGGCGTGGAAAGTCAGTTGTTTGTGAAGCAATTATTAAAGAAGAGGTGGTTAAGAAGGTATTGAAGACCAACGTGGCTGCCTTAGTGGAACTTAACATGCTTAAAAACCTTGCCGGTTCTGCTGTTGCTGGTGCTCTTGGTGGATATAATGCTCATGCCAGCAATATTGTTTCTGCCATTTTTATAGCCACTGGTCAAGATCCAGCGCAAAATGTTGAGAGCTCTCACTGCATAACCATGATGGAAGCCGTCAATGAGGGGAGAGATCTTCATATCTCGGTGTCTATGCCTTCCATTGAGGTGGGTACAGTTGGAGGTGGTACTCAGCTAGCATCTCAGTCTGCTTGCTTGAACTTACTGGGTGTGAAGGGCGCGAGCAAGGAGTCACCAGGATCGAACTCTAGACTATTGGCCACCATTGTTGCTGGTTCAGTTTTGGCAGCAGAGCTGTCTCTGATGTCTGCCATTGCTGCAGGCCAGCTTGTAAGGAGTCACATGAAATACAATAGATCAAGCAAGGATGTTTGTAAAATGGCAAGTTGA 1782 0.4978 MDPHRRRRLPPATPHEGSASSPNLLKKPSSAVANGGRRTSSPTPKASDALPLPLYLTNAVFFTLFFSVAYYLLHRWRDKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRASHDVWDLEDDAGEADAAAESRAHNHHPRSDFVIEQPVPKLMVDPDHLVSSISSEEDEKIVQSVLDGTIPSYSLESKLGDCKRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGANSIVLRDGMTRAPVVRFATAKRAAELKFYLEDPLNFDTLAVVFNRSSRFARLQSIHCSIAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLAGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNEGRDLHISVSMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAAELSLMSAIAAGQLVRSHMKYNRSSKDVCKMAS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0040 593 MobiDBLite consensus disorder prediction 1 45 - -
Lele27g0040 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 405 578 - -
Lele27g0040 593 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 179 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lele27g0040 593 CDD HMG-CoA_reductase_classI 180 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lele27g0040 593 Pfam Hydroxymethylglutaryl-coenzyme A reductase 207 583 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 Gene3D - 300 416 IPR009023 -
Lele27g0040 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 514 521 IPR023076 GO:0004420
Lele27g0040 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 239 260 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 502 523 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 448 474 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 266 286 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 357 375 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 397 422 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 Gene3D - 168 249 IPR023282 GO:0004420
Lele27g0040 593 Gene3D - 250 578 IPR023074 GO:0004420
Lele27g0040 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 175 249 - -
Lele27g0040 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 359 373 IPR023076 GO:0004420
Lele27g0040 593 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 300 416 IPR009023 -
Lele27g0040 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 568 581 IPR023076 GO:0004420
Lele27g0040 593 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 31 587 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 174 572 IPR009029 GO:0015936|GO:0016616
Lele27g0040 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 300 416 - -
Lele27g0040 593 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 179 583 IPR002202 GO:0004420|GO:0015936
Lele27g0040 593 MobiDBLite consensus disorder prediction 16 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0040 Lele-ChrLele27 322467 325620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0040 1 588 Lipid Metabolism Gene Families AT1G76490 75.932 0.0 910
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0040 27 322467 325620 Lele28g2089 28 23826692 23829859 ECH
Lele27g0040 27 322467 325620 Lele27g0040 27 322467 325620 ECH
Lele25g2037 25 27747763 27750896 Lele27g0040 27 322467 325620 hybridization
Lele26g2089 26 23949831 23952999 Lele27g0040 27 322467 325620 hybridization