Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g2089 ATGGATCCACATCGCCGCCGCCGTCCCCCTCCGGCAACCCCTCACGAAGGCTCAGCCTCTTCTTCTCCCAATCCCCTGAAGAAGCCTTCCTCCACCGTCGCCAACGGCGGCCGTCGAACCTCGTCTCCCACTCCTAAAGCTTCTGATGCCCTACCTCTGCCGCTGTACCTTACCAATGCTGTTTTCTTCACGCTCTTCTTCTCTGTAGCGTACTATCTCCTCCACCGCTGGCGTGACAAGATCCGCAACTCTACCCCTCTTCACGTTGTTACCTTGTCTGAGATTGCCGCCATTGTGTCCCTCATCGCGTCTTTTATTTACCTTCTCGGGTTTTTCGGCATTGACTTTGTACAGTCCTTCATCTCGCGTGCTTCTCACGATGTTTGGGACCTCGAGGACGACGCCGGCGAGGCCGATGCTGCTGCTGAGTCTCGTGCTCACAACCACCACCCCCGCAGTGATTTCGTCATCGAGCAACCGGTTCCTAAATTGATGGTGGATCCCGATCCTTTGGTTTCGTCTATTTCCTCCGAGGAAGATGAGAAGGTCGTACAGTCTGTGCTAGATGGTACGGTTCCATCGTACTCACTCGAGTCCAAGCTCGGGGACTGTAAGCGGGCGGCGGCCATTCGACGTGAGGCCTTGCAGAAGATGACTGGGAGATCTCTCCAGGGATTACCGTTGGATGGGTTCGATTACGATTCAATTTTGGGGCAGTGCTGTGAAATGCCGGTAGGTTTCGTACAAATTCCTGTGGGAGTAGCTGGGCCGTTGTTGCTGGATGGGTTTGAGTATACTGTACCAATGGCAACCACTGAGGGGTGCTTGGTGGCGAGCACGAACAGAGGTTGTAAAGCCATTTATGCTTCTGGTGGAGCTAACAGCATAGTGCTGAGGGATGGGATGACCAGAGCGCCTGTTGTAAGGTTCACTACCGCCAAAAGGGCTGCGGAGTTGAAGTTCTATCTGGAAGATCCTCTCAATTTTGATACCTTGGCCGTCGTTTTTAATAGGTCAAGTAGATTTGCTAGGCTTCAAAGTATTCATTGTTCTATCGCCGGAAAGAACCTTTACATGAGATTCAGCTGTAGCACAGGTGATGCCATGGGGATGAACATGGTTTCCAAAGGCGTGCAGAATGTTCTTGATTTCCTTCAAAATGATTTCCCGGACATGGATGTTATTGGCATCTCTGGGAATTATTGTTCGGACAAGAAACCTGCTGCTGTAAATTGGATTGAGGGGCGTGGAAAGTCAGTTGTTTGTGAAGCAATTATTAAAGAAGAGGTGGTTAAGAAGGTATTGAAGACCAACGTGGCTGCCTTAGTGGAACTTAACATGCTTAAAAACCTTGCCGGTTCTGCTGTTGCTGGTGCTCTTGGTGGATATAATGCTCATGCCAGCAATATTGTTTCTGCCATTTTTATAGCCACTGGTCAAGATCCAGCGCAAAATGTTGAGAGCTCTCACTGCATAACCATGATGGAAGCTGTCAATGAGGGGAGAGATCTTCATATCTCGGTGTCTATGCCTTCCATTGAGGTGGGTACAGTTGGAGGTGGTACTCAGCTAGCATCTCAGTCTGCTTGCTTGAACTTACTGGGTGTGAAGGGCGCGAGCAAGGAGTCACCGGGATCGAACTCTAGGCTCTTGGCCACCATTGTTGCTGGTTCAGTTTTGGCAGCAGAGCTGTCTCTGATGTCTGCCATTGCTGCAGGCCAGCTTGTAAGGAGTCACATGAAATACAATAGATCAAGCAAGGATGTCTGTAAAATGGCAAGTTGA 1785 0.502 MDPHRRRRPPPATPHEGSASSSPNPLKKPSSTVANGGRRTSSPTPKASDALPLPLYLTNAVFFTLFFSVAYYLLHRWRDKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRASHDVWDLEDDAGEADAAAESRAHNHHPRSDFVIEQPVPKLMVDPDPLVSSISSEEDEKVVQSVLDGTVPSYSLESKLGDCKRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGFVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGANSIVLRDGMTRAPVVRFTTAKRAAELKFYLEDPLNFDTLAVVFNRSSRFARLQSIHCSIAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLAGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNEGRDLHISVSMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAAELSLMSAIAAGQLVRSHMKYNRSSKDVCKMAS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g2089 594 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 176 250 - -
Lele26g2089 594 Pfam Hydroxymethylglutaryl-coenzyme A reductase 208 584 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 Gene3D - 301 417 IPR009023 -
Lele26g2089 594 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 180 584 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 515 522 IPR023076 GO:0004420
Lele26g2089 594 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 176 573 IPR009029 GO:0015936|GO:0016616
Lele26g2089 594 CDD HMG-CoA_reductase_classI 181 584 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lele26g2089 594 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 301 417 - -
Lele26g2089 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 358 376 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 398 423 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 449 475 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 267 287 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 240 261 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 503 524 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 33 588 IPR002202 GO:0004420|GO:0015936
Lele26g2089 594 MobiDBLite consensus disorder prediction 1 46 - -
Lele26g2089 594 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 406 579 - -
Lele26g2089 594 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 569 582 IPR023076 GO:0004420
Lele26g2089 594 MobiDBLite consensus disorder prediction 15 46 - -
Lele26g2089 594 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 360 374 IPR023076 GO:0004420
Lele26g2089 594 Gene3D - 251 579 IPR023074 GO:0004420
Lele26g2089 594 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 301 417 IPR009023 -
Lele26g2089 594 Gene3D - 171 250 IPR023282 GO:0004420
Lele26g2089 594 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 180 584 IPR004554 GO:0004420|GO:0005515|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g2089 Lele-ChrLele26 23949831 23952999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g2089 1 589 Lipid Metabolism Gene Families AT1G76490 75.296 0.0 909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g2037 25 27747763 27750896 Lele26g2089 26 23949831 23952999 ECH
Lele26g2089 26 23949831 23952999 Lele26g2089 26 23949831 23952999 ECH
Lele26g2089 26 23949831 23952999 Lele27g0040 27 322467 325620 hybridization
Lele26g2089 26 23949831 23952999 Lele28g2089 28 23826692 23829859 hybridization