Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g2037 ATGGATCCACATCGCCGCCGCCGCCCCCCTCCGGCCACACCTCACGAAGGCTCAGCCGCTTCTTCTCCCAATCTCCTCAAGAAGCCTTCCTCCGACGTCGTCAACGGCGGCTGTCGAACCTCGTCTCCCACTCCTAAAGCTTCTGATGCCCTACCTCTGCCGCTGTACCTTACCAATGCTGTTTTCTTCACGCTCTTCTTCTCTGTAGCGTACTATCTCCTCCACAGCTGGCGTGACAAGATCCGCAACTCTACCCCTCTTCACGTTGTTACCTTGTCTGAGATTGCCGCCATTGTGTCCCTCATCGCGTCTTTTATTTACCTTCTCGGGTTTTTCGGCATTGACTTTGTACAGTCCTTCATCTCGCGTGCTTCTCACGATGTTTGGGACCTCGAGGGCGATGCCGGTGCTGCTGCTGAGTCTCCTGCTCACAACCACCACCCCCGCCGTGATTTCGCCATCGAGCAACCGGTTCCTAAATTGACGGTGGATCCCGATCCTTTGGTTTCGTATATTTCATCCGAGGAAGATGAGAAGATCGTACAGTCTGTGCTAGATGGTACGATTCCATTGTACTCACTCGAGTCGAAGCTCGGGGACTGTAAGCGGGCGGCGGCCATTCGACGTGAGGCCTTGCAGAAGATGACTGGGAGATCTCTTCAGGGATTACCGTTGGATGGGTTCGATTACGATTCAATTTTGGGGCAGTGCTGTGAAATGCCGGTAGGTTACGTACAAATTCCGGTGGGAGTAGCTGGGCCGTTGTTGCTTGATGGGTTTGAGTATACTGTACCAATGGCAACCACTGAGGGGTGCTTGGTGGCGAGCACGAACAGAGGTTGTAAAGCCATTTATGCTTCTGGTGGAGCTAACAGCATAGTGCTAAGGGATGGGATGACCAGAGCGCCTGTGGTAAGGTTCGCTACTGCCAAAAGGGCTGCGGAGTTGAAGTTCTATCTGGAAGATCCTCTCAATTTTGATACCTTGGCCGTCGTTTTTAATAGGTCAAGTAGATTTGCTAGGCTTCAAAGTATTCATTGTTCTATCGCCGGAAAGAACCTTTACATGAGATTCAGCTGTAGCACAGGTGATGCCATGGGGATGAACATGGTTTCCAAAGGCGTGCAGAATGTTCTTGATTTCCTTCAAAATGATTTCCCGGACATGGATGTTATTGGCATCTCTGGGAATTATTGTTCGGACAAGAAACCTGCTGCTGTAAATTGGATTGAGGGGCGTGGAAAGTCAGTTGTTTGTGAAGCAATTATTAAAGAAGAGGTGGTCAAGAAGGTATTGAAGACCAACGTGGCTACCTTAGTGGAACTTAACGTGCTTAAAAACCTTGCCGGTTCTGCTGTTGCTGGTGCTCTTGGTGGATATAATGCTCATGCCAGCAATATTGTTTCTGCCATTTTTATAGCCACTGGTCAAGATCCAGCCCAAAATGTTGAGAGCTCTCACTGCATAACCATGATGGAAGCCGTCAATGAGGGGAGAGATCTTCATATCTCGGTGTCTATGCCTTCCATTGAGGTGGGTACAGTTGGAGGTGGTACTCAGCTAGCATCTCAGTCTGCTTGCTTGAACTTATTGGGTGTGAAGGGTGCGAGCAAGGAGTCACCGGGATCGAACTCTAGACTCTTGGCCACCATTGTTGCTGGTTCAGTTTTGGCAGGAGAGCTATCTCTGATGTCAGCCATTGCTGCAGGCCAGCTTGTAAGGAGTCACATGAAATACAATAGATCAAGCAAGGATGTCTGTAAAATGGCAAGTTGA 1776 0.4966 MDPHRRRRPPPATPHEGSAASSPNLLKKPSSDVVNGGCRTSSPTPKASDALPLPLYLTNAVFFTLFFSVAYYLLHSWRDKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRASHDVWDLEGDAGAAAESPAHNHHPRRDFAIEQPVPKLTVDPDPLVSYISSEEDEKIVQSVLDGTIPLYSLESKLGDCKRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGANSIVLRDGMTRAPVVRFATAKRAAELKFYLEDPLNFDTLAVVFNRSSRFARLQSIHCSIAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVATLVELNVLKNLAGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNEGRDLHISVSMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVRSHMKYNRSSKDVCKMAS 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g2037 591 MobiDBLite consensus disorder prediction 1 45 - -
Lele25g2037 591 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 512 519 IPR023076 GO:0004420
Lele25g2037 591 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 237 258 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 446 472 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 264 284 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 500 521 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 355 373 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 395 420 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 403 576 - -
Lele25g2037 591 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 172 570 IPR009029 GO:0015936|GO:0016616
Lele25g2037 591 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 173 247 - -
Lele25g2037 591 Pfam Hydroxymethylglutaryl-coenzyme A reductase 205 581 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 MobiDBLite consensus disorder prediction 17 45 - -
Lele25g2037 591 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 42 585 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 357 371 IPR023076 GO:0004420
Lele25g2037 591 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 177 581 IPR002202 GO:0004420|GO:0015936
Lele25g2037 591 CDD HMG-CoA_reductase_classI 178 581 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lele25g2037 591 Gene3D - 298 414 IPR009023 -
Lele25g2037 591 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 298 414 IPR009023 -
Lele25g2037 591 Gene3D - 248 576 IPR023074 GO:0004420
Lele25g2037 591 Gene3D - 169 247 IPR023282 GO:0004420
Lele25g2037 591 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 298 414 - -
Lele25g2037 591 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 177 581 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lele25g2037 591 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 566 579 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g2037 Lele-ChrLele25 27747763 27750896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g2037 1 586 Lipid Metabolism Gene Families AT1G76490 75.424 0.0 909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g2037 25 27747763 27750896 Lele26g2089 26 23949831 23952999 ECH
Lele25g2037 25 27747763 27750896 Lele25g2037 25 27747763 27750896 ECH
Lele25g2037 25 27747763 27750896 Lele27g0040 27 322467 325620 hybridization
Lele25g2037 25 27747763 27750896 Lele28g2089 28 23826692 23829859 hybridization