Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0901 ATGGCTTCCCTCCCTTTGCTCTGCATATTTTGTCTCTGCCTTTGCATCTTTCCCCTTTCCTCATCCGCTGCTCTGCTCTTTCAGGGTTTCAACTGGGAATCAAGTAACCAAGGAGGATGGTACCACTCGCTCAAGAACTCAATCTCTGACCTAGCCAGTGTCAGAATCACCCATGTTTGGCTCCCTCCTCCTTCCGAATCCGTTTCTTCTCAAGGATATCTTCCGGGAAGGCTGTATGATCTGGATGCATCAAAATATGGTTCCAAGGATGAATTGAAGTCACTGATCGCAGCTTTCCATGAGAAGGGAATTAAATGCTTGGCTGACATAGTCATCAACCACAGAACTGCAGAAAGGAAGGATGGAAGAGGAATCTACTGCATCTTCGAAGGTGGCACTCCTGATTCACGTCTCGATTGGGGTCCATCGTTCATTTGCAGAGACGACATCGCCTACTCTGATGGCACCGGACATCTCGATAGTGGAGAGCCATACGACCCCGCACCGGACATCGACCATCTCAGTCCTCAAGTTCAGTCGGAGCTGTCCGATTGGATGAGTTGGTTGAAGAGCGAAGTAGGGTTTGATGGGTGGCGTTTTGATTTCGTAAAGGGCTATGCTCCCAATATCACCAAGATTTACATGCAACGAACGTCACCAGATTTCGCCGTCGGGGAAAAATGGGACGATATGCCTCAAGGGCAGGACGGAAAGCCTCAGAATAATCAAGACGCTCATCGTGGCGCGTTGGTGAATTGGGTGGAAGAGGCCGGCGGTGCTGTCACTGCCTTTGATTTCACAACCAAAGGGATCCTTCAGGCCGCCGTACAAGGGGAGCTATGGAGGTTGAAGGACTCAAACGGGAAGCCGCCGGGAATGATCGGGACAAAGCCAGAAAATGCGGTGACCTTCATCGACAATCATGACACAGGTTCGACTCAGAAACTATGGCCATTCCCAGAAGATAAAGTCATGCAGGGATACGCATACATTCTAACTCATCCCGGAATACCATCAATATTCTATGATCACTTTGTGGAGTGGGGGCTGAAGGAAGAGATAGGGAAATTGAGTGGGATAAGGAGGAGGAACGAGATCAATGAGAAAAGCAGCGTGAAGATATTAGCAGCTGAAGCTGAGGTTTACATGGCAGAGATAGATGAGAAGGTGATAATGAAGATCGGGTCAAAGATGGATCCTGAAGGTGCTGTTCCTTCTAACTTCCGGCTCGCTGCTTCGGGTCAAGATTATGCTAACTGCAGAGAAAATGAACGCAAGATGAATTTACTGCATCTTCGAAAGTGTGGAAAGGATTACGAGCCCGCACCAGACATCGACCATCTCAATCCTCAAGTTCAGTCAGATCTGTCAGATTGGATGAATTTTCTCAAGACAGAAGTAGGGTTCGATGGATGGCGACTCGATTACGTAAAGGGCTATGCCCCCAGCATCACCAAGATTTACATGCAACGAACCTCACCACACTTCTCCGTTGGGGAAAAATGGGAGGATATGCCTCAAGGGCAGGACGGGAAGCCTCAGAATAATCAAGACGCTCATAGTGGTGCGTTGGTGAACTGGGTGGAAGAGGCAGGTGGGGCTGTCACTGCCTTTGATTTCACGACCAAAGGGATCCTTCAGGCCTCCGTACAAGGGGAGCTATGGAAGTTAAAGGACTCGAACGGCAAGCCGCTGGGAACGATCAGGACAAAGCCAGAAAATGCGGGGGACGTTCATTTACAATCATGA 1749 0.4923 MASLPLLCIFCLCLCIFPLSSSAALLFQGFNWESSNQGGWYHSLKNSISDLASVRITHVWLPPPSESVSSQGYLPGRLYDLDASKYGSKDELKSLIAAFHEKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDSRLDWGPSFICRDDIAYSDGTGHLDSGEPYDPAPDIDHLSPQVQSELSDWMSWLKSEVGFDGWRFDFVKGYAPNITKIYMQRTSPDFAVGEKWDDMPQGQDGKPQNNQDAHRGALVNWVEEAGGAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGMIGTKPENAVTFIDNHDTGSTQKLWPFPEDKVMQGYAYILTHPGIPSIFYDHFVEWGLKEEIGKLSGIRRRNEINEKSSVKILAAEAEVYMAEIDEKVIMKIGSKMDPEGAVPSNFRLAASGQDYANCRENERKMNLLHLRKCGKDYEPAPDIDHLNPQVQSDLSDWMNFLKTEVGFDGWRLDYVKGYAPSITKIYMQRTSPHFSVGEKWEDMPQGQDGKPQNNQDAHSGALVNWVEEAGGAVTAFDFTTKGILQASVQGELWKLKDSNGKPLGTIRTKPENAGDVHLQS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0901 582 PANTHER ALPHA-AMYLASE 30 419 - -
Lele26g0901 582 Gene3D Glycosidases 25 365 - -
Lele26g0901 582 FunFam Alpha-amylase 1 24 365 - -
Lele26g0901 582 SMART alpha-amyl_c2 362 423 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele26g0901 582 Pfam Alpha amylase, catalytic domain 53 342 IPR006047 GO:0005975
Lele26g0901 582 Pfam Alpha-amylase C-terminal beta-sheet domain 363 418 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele26g0901 582 SUPERFAMILY (Trans)glycosidases 438 561 IPR017853 -
Lele26g0901 582 PRINTS Alpha-amylase signature 195 206 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele26g0901 582 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele26g0901 582 PRINTS Alpha-amylase signature 299 311 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele26g0901 582 MobiDBLite consensus disorder prediction 501 520 - -
Lele26g0901 582 Gene3D - 366 417 IPR013780 -
Lele26g0901 582 MobiDBLite consensus disorder prediction 561 582 - -
Lele26g0901 582 CDD AmyAc_arch_bac_plant_AmyA 26 372 - -
Lele26g0901 582 Gene3D Glycosidases 418 577 - -
Lele26g0901 582 SUPERFAMILY Glycosyl hydrolase domain 366 418 - -
Lele26g0901 582 SMART aamy 24 361 IPR006047 GO:0005975
Lele26g0901 582 SUPERFAMILY (Trans)glycosidases 26 354 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0901 Lele-ChrLele26 5789949 5793782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0901 435 575 Glycoside Hydrolase AT4G25000 65.493 6.06e-57 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0901 26 5789949 5793782 Lele27g1185 27 18952394 18954022 hybridization
Lele26g0901 26 5789949 5793782 Lele28g0884 28 5707239 5715613 hybridization