Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0884 ATGGCTTCCCTCCCTTTGCTCTGCATATTTTGTCTCTGCCTTTGCATCTTTCCCCTTTCCTCATCCGCTGCTCTGCTCTTTCAGGGTTTCAACTGGGAATCAAGTAACAAAGGAGGATGGTACAACTCGCTCAAGAACTCAATCTCTGACCTAGCCAGCGTTGGAATCACCCATGTTTGGCTCCCTCCTCCTTCCCAATCCGTTTCTTCTCAAGGATATCTGCCCGGAAGGCTGTATGATCTGGATGCATCAAAATATGGTTCCAAGGATGCATTGAAGTCACTGATCGCATCTTTCCATGAGAAGGGAATTAAATGCTTGGCGGACATAGTCATCAACCACAGAACTGCAGAAAGGAAGGATGGAAGAGGAATCTACTGCATCTTCGAAGGTGGCACTCCTGATTCACGTCTCGATTGGGGTCCATCGTCCATTTGCAGAGACGACATCGCCTACTCTGATGGCACTGGACATCTCGATAGTGGAGAGCCATACGACCCCGCACCGGACATCGACCATCTCAATCCTCAAGTTCAGTCGGAGCTGTCCGATTGGATGAGTTGGTTGAAGAGGGAAGTAGGGTTTGATGGATGGCGTTTTGATTTCGTAAAGGGCTATGCTCCCAATATCACCAAGATTTACATGCAACGAACGTCACCAGATTTCGCCGTCGGGGAAAAATGGGACGATATGCCTCAAGGGCAGGACGGAAAGCCTCAGAATAATCAAGACGCTCATCGTGGCGCTTTGGTGAATTGGGTGGAAGAGGCGGGCGGTGCTGTCACTGCCTTTGATTTCACAACCAAAGGGATCCTTCAGGCCGCCGTACAAGGGGAGCTATGGAGGTTGAAGGACTCGAACGGGAAGCCTCCGGGAATGATCGGGACAAAGCCAGAAAATGCGGTGACCTTCATCGACAATCATGACACAGGTTCCACTCAGAAACTATGGCCATTCCCAGAAGATAAAGTCATGCAGGGATACGCATACATTCTAACTCATCCCGGAATATCATCAATATTCTATGATCACTTTGTGGATTGGGGCCTGAAGGAAGAGATAGGGAAATTGAGTGGGATAAGGAGGAGGAACGAGATCAATGAGAAAAGCAGCGTGAAGATATTAGCAGCTGAAGCTGAGGTTTACATGGCAGAGATAGATGAGAAGGTGATAATGAAGATCGGGTCAAAGATGGATCCTGAAGGTGCTGTTCCTTCTAACTTCCGGCTCGCTGCTTCTGGTAAAGATTATGCTCTCCTCACAACGCCTGGAAAGGATTACGAGCCCGCACCAGACATCGACCATCTCAATCCTAAAGTTCAGTCAGATCTGTCAGATTGGATGAATTTTCTCAAGACAGAAGTAGGGTTCGATGGATGGCGACTCGATTACTTAGGTGGCGCTGTCACTGCCTTTGATTTCACGACCAAAGGGATCCTTCAGGCCGCCGTACAAGGGGAGCTATGGAAGTTAAAGGACTCGAATGGGAAGCCGTCGGGAATGATCGGGACAAAGCCAGAAAATGAGGTGACGTTCATTTACAATCATGACACAGGTTCCACTCAGCAACATTGGCCCTTCCCTTCCGACAAAGTGATGCAAGGATATGCATACATTCTAACTCATCCTGGAATCCCCACAATAATGGAGTGGGGGTCGAAGGAGGAGATAGGGAGGTTGAGTGGGATAAGGAGGAGGAATGGGATAAATGAGAGAAGAAATGTGAAGATGTTAGCAGCGGAAGCAGAAGTGTATATGGCGGAGAAAGATAACAAAGTCATAATGAAGATTGGGCCTAAGATGGATCTTGGAGGACTTCTTCACTCTAATGTCATCTTACCGGCAGCTGCCTCTGGCCAAGACTATGCCGTGTGGGAGACGACCAATTGCACCCAAATTACCGAACATCCCACTGCTTACAATTTAACCCATTCGATTACTTCTACGATCACTTCGTGGATTGATAAGGAAGCTGAGGCGTACATGGCAGAGATAGACCATAAGGTTGATCTCGTAAAGATTGGATCAAAGATGGATCCGAGAGGTGTTAAATTAAACATGAAATCTCTCGCCTCTTTCTGTTTCGCCTTCCTCTGCATTTCACTTCTCCCTTCCTTCTCCTCCTCTTCCATACTGTTCCAGGGCTTCAACTGGGCATCCTATGAGAAAGCAGGAGGATTTTACAACTATCTCAAGACTCAGGTGCCTTTAATTGCTGATCTTGGCGTCGACTATGTTTGGCTTCCTCCTCCCTCCAACTCTCACCCTAATGGTTCTCAAGGATACTTGCCGAAAAGATTATATGATCTTGACACCTCAAAATACGGTAACAAGGAGGAATTGAAGTCACTGATAGCGGCATTCCGTGATCGAGGAGTGAAATGCATAGCCGACATTGTTATCAACCACAGAACTGCAGAGAGGCTGGACGAAAGAGGACTTAGCGTCTTTGAAGGTGGTACTCCTGACGACCGTCTAGACTGGGGTGTGTCAGAAATCTGTTCCAATGATACAAAGTTTAACGGCGCCGGAAATCCCGACACCGGCATGGACTGGGGGGATGCCCCAGACATCGACCACACCAGCCCCAGGGTGCAGCGCGAGCTCTCTGATTGGATGAACTGGTTGAAGTCAGACGTTGGATTCGTAGGATGGAGGTTCGACATGGTATTAGGCTACGCTCCCAGGTTCACAAAAATCTACATGGACAATACCAAACCGGAGTTCGCTGTCGGCGAGCTTTTTGAGGCTGCGTCTATTGGCTCAGACGGAAAGCCCTTGGCCAACCAAGATCCCCATCGTGCTAGACTGGTGCAGTGGGTGCAAGACGCTGGTGGCGCCGTCACAACCTTCGACTTCACAACCAAAATGGTGCTGGGAGCCGCCGTACAAGGGGAACTGTGGAGGATGAAGGACGCGAAAGGGAAGCCACCGGGGATGATCGGAACCGACCCATCCCACGCAGTCACCTTAATCGACAACCACGACACGTGGTCCCAGAAAACCTGGCCCTTCCCACAGGATAAAGTCACCCTTGGATACGCTTACTCACTCACTCACCCAGGCCATCCCTCGATTTTCTACGATCACTACATCGATTGGGTAGAACAGAGAGCGCCCATAAAGAATTTGATCGACATAAGGAAGAGGAATGGGATAAACCCAACGAGCAGCGTCAACATTCTGGCGGCAGATGCTGATCTGTACATGGCTGAGATAGACAACAAGATCGTCGTCAAGATTGGATCCAACGGTGATCTCAAGAACCTTCTTCCTCAAAATGCGGTTCTCGCTACCAGTGGACTAGACTTCGCCGTTTGGGAACTCCGCTGA 3333 0.4914 MASLPLLCIFCLCLCIFPLSSSAALLFQGFNWESSNKGGWYNSLKNSISDLASVGITHVWLPPPSQSVSSQGYLPGRLYDLDASKYGSKDALKSLIASFHEKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDSRLDWGPSSICRDDIAYSDGTGHLDSGEPYDPAPDIDHLNPQVQSELSDWMSWLKREVGFDGWRFDFVKGYAPNITKIYMQRTSPDFAVGEKWDDMPQGQDGKPQNNQDAHRGALVNWVEEAGGAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGMIGTKPENAVTFIDNHDTGSTQKLWPFPEDKVMQGYAYILTHPGISSIFYDHFVDWGLKEEIGKLSGIRRRNEINEKSSVKILAAEAEVYMAEIDEKVIMKIGSKMDPEGAVPSNFRLAASGKDYALLTTPGKDYEPAPDIDHLNPKVQSDLSDWMNFLKTEVGFDGWRLDYLGGAVTAFDFTTKGILQAAVQGELWKLKDSNGKPSGMIGTKPENEVTFIYNHDTGSTQQHWPFPSDKVMQGYAYILTHPGIPTIMEWGSKEEIGRLSGIRRRNGINERRNVKMLAAEAEVYMAEKDNKVIMKIGPKMDLGGLLHSNVILPAAASGQDYAVWETTNCTQITEHPTAYNLTHSITSTITSWIDKEAEAYMAEIDHKVDLVKIGSKMDPRGVKLNMKSLASFCFAFLCISLLPSFSSSSILFQGFNWASYEKAGGFYNYLKTQVPLIADLGVDYVWLPPPSNSHPNGSQGYLPKRLYDLDTSKYGNKEELKSLIAAFRDRGVKCIADIVINHRTAERLDERGLSVFEGGTPDDRLDWGVSEICSNDTKFNGAGNPDTGMDWGDAPDIDHTSPRVQRELSDWMNWLKSDVGFVGWRFDMVLGYAPRFTKIYMDNTKPEFAVGELFEAASIGSDGKPLANQDPHRARLVQWVQDAGGAVTTFDFTTKMVLGAAVQGELWRMKDAKGKPPGMIGTDPSHAVTLIDNHDTWSQKTWPFPQDKVTLGYAYSLTHPGHPSIFYDHYIDWVEQRAPIKNLIDIRKRNGINPTSSVNILAADADLYMAEIDNKIVVKIGSNGDLKNLLPQNAVLATSGLDFAVWELR 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0884 1110 SMART aamy 710 1048 IPR006047 GO:0005975
Lele28g0884 1110 SMART aamy 24 361 IPR006047 GO:0005975
Lele28g0884 1110 Gene3D - 366 421 IPR013780 -
Lele28g0884 1110 Gene3D Glycosidases 422 466 - -
Lele28g0884 1110 SUPERFAMILY Glycosyl hydrolase domain 366 419 - -
Lele28g0884 1110 SUPERFAMILY (Trans)glycosidases 26 354 IPR017853 -
Lele28g0884 1110 CDD AmyAc_arch_bac_plant_AmyA 26 372 - -
Lele28g0884 1110 Gene3D Glycosidases 709 1052 - -
Lele28g0884 1110 SUPERFAMILY Glycosyl hydrolase domain 569 626 - -
Lele28g0884 1110 FunFam Alpha-amylase 1 24 365 - -
Lele28g0884 1110 SUPERFAMILY Glycosyl hydrolase domain 1053 1108 - -
Lele28g0884 1110 Gene3D Glycosidases 467 570 - -
Lele28g0884 1110 PANTHER ALPHA-AMYLASE 30 419 - -
Lele28g0884 1110 Gene3D - 1053 1109 IPR013780 -
Lele28g0884 1110 Gene3D - 571 627 IPR013780 -
Lele28g0884 1110 PRINTS Alpha-amylase signature 299 311 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele28g0884 1110 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele28g0884 1110 PRINTS Alpha-amylase signature 195 206 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele28g0884 1110 FunFam Alpha-amylase 1 710 1052 - -
Lele28g0884 1110 Gene3D Glycosidases 25 365 - -
Lele28g0884 1110 Pfam Alpha-amylase C-terminal beta-sheet domain 363 418 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele28g0884 1110 Pfam Alpha-amylase C-terminal beta-sheet domain 566 626 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele28g0884 1110 Pfam Alpha-amylase C-terminal beta-sheet domain 1050 1108 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele28g0884 1110 SUPERFAMILY (Trans)glycosidases 713 1035 IPR017853 -
Lele28g0884 1110 SUPERFAMILY (Trans)glycosidases 426 549 IPR017853 -
Lele28g0884 1110 SMART alpha-amyl_c2 1049 1109 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele28g0884 1110 SMART alpha-amyl_c2 565 627 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele28g0884 1110 SMART alpha-amyl_c2 362 422 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele28g0884 1110 Pfam Alpha amylase, catalytic domain 51 233 IPR006047 GO:0005975
Lele28g0884 1110 Pfam Alpha amylase, catalytic domain 736 895 IPR006047 GO:0005975
Lele28g0884 1110 CDD AmyAc_arch_bac_plant_AmyA 714 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0884 Lele-ChrLele28 5707239 5715613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0884 424 626 Glycoside Hydrolase AT4G25000 50.570 1.66e-67 231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0892 25 5720420 5722054 Lele28g0884 28 5707239 5715613 hybridization
Lele26g0901 26 5789949 5793782 Lele28g0884 28 5707239 5715613 hybridization