Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1185 ATGGCTTCCCTCCCTCTGCTCTGCATATTTTGTCTCTGCCTTTGCATCTTTCCCCTGTTCTCATCCGCGGCTCTGCTCTTTCAGGGTTTCAACTGGGAATCAAGTAACAAAGGAGGATGGTACAACTCGCTCAAGAACTCAATCTCTGACCTAGCCAGTATCGGTGTCACCCATGTTTGGCTCCCTCCTCCTTCTCAATCCGTTTCTTCTCAAGGATATCTTCCTGGAAGGCTATATGATCTGGATGCATCAAAATATGGTTCCAAGGATCAATTGAAGTCAACGATCAAAGCTTTCCATGACCAGGGAATTAAATGCTTGGCTGACATAGTCATCAACCACAGAACTGCAGAGAGGAAGGACGGAAGAGGAATCTACTGCATCTTCGAAGGTGGAACTCCTGATTCACGTCTCGATTGGGGTCCATCGTTCATTTGCAGGGACGACATCGCCTATTCTGATGGCACAGGGCATCTCGATAGTGGAGAGCCATACGACCCCGCACCGGACATCGACCATCTCAATCCTCAAGTTCAGTCAGAGCTATCAGATTGGATGAATTGGCTGAAGACAGAAGTAGGGTTTGATGGATGGCGTTTTGATTTTGTAAAGGGCTATGCTCCCAATATCACCAAGATTTATATGCAACGAACGTCACCGGGCTTCGCAGTCGGAGAGAAATGGGACTCTCTGTCTTACGGGCGGGACGGGAAGCCTGAGTATAACCAAGACGCTCATCGTGGTGCGTTGGTGAATTGGGTGGGAGAGGCCGGCGGAGATGTCACTGCCTTTGATTTCACAACCAAAGGGATCCTTCAAGCAGCGGTACAAGGGGAGCTATGGAGGTTGATTGACCCGAACGGGAAGCCGCCGGGAATGATCGGGACAAAACCAGAAAATGCGGTGACGTTCATTGACAATCATGACACAGGTTCCACTCAGAAACAATGGCCCTTCCCTTCAGACAAAGTCATGCAGGGATACGCATACATTCTAACGCACCCCGGAACACCATCAATATTCTACGATCACTTGCTGGAGTGGGGGCTGAAGGAGGAGATCGGGAAATTGAGTGGGATAAGGAGGAGGAATGGGATCAACGAGAGAAGTAGCATGAAGATATTAGCAGCAGAAGCGGATCTGTATATGGCAGAGGTGGATGGCAAGGTGATAATGAAGATTGGGCCTAAGATGGATATTGGAGGACTTGTTCCTTCTAATTTTCGACTCGCAACCTCAGGCCAAGACTATGCTGTGTGGGAGAAATCTTCTCAGCATTATACCGTATAA 1290 0.4876 MASLPLLCIFCLCLCIFPLFSSAALLFQGFNWESSNKGGWYNSLKNSISDLASIGVTHVWLPPPSQSVSSQGYLPGRLYDLDASKYGSKDQLKSTIKAFHDQGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDSRLDWGPSFICRDDIAYSDGTGHLDSGEPYDPAPDIDHLNPQVQSELSDWMNWLKTEVGFDGWRFDFVKGYAPNITKIYMQRTSPGFAVGEKWDSLSYGRDGKPEYNQDAHRGALVNWVGEAGGDVTAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGTKPENAVTFIDNHDTGSTQKQWPFPSDKVMQGYAYILTHPGTPSIFYDHLLEWGLKEEIGKLSGIRRRNGINERSSMKILAAEADLYMAEVDGKVIMKIGPKMDIGGLVPSNFRLATSGQDYAVWEKSSQHYTV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1185 429 CDD AmyAc_arch_bac_plant_AmyA 26 371 - -
Lele27g1185 429 Gene3D Glycosidases 25 365 - -
Lele27g1185 429 PIRSF Alpha-amylase_plant 1 423 IPR013775 GO:0004556|GO:0005509|GO:0005975
Lele27g1185 429 Pfam Alpha amylase, catalytic domain 51 208 IPR006047 GO:0005975
Lele27g1185 429 PANTHER ALPHA-AMYLASE 30 422 - -
Lele27g1185 429 Gene3D - 366 423 IPR013780 -
Lele27g1185 429 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele27g1185 429 PRINTS Alpha-amylase signature 195 206 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele27g1185 429 PRINTS Alpha-amylase signature 299 311 IPR006046 GO:0004556|GO:0005975|GO:0043169
Lele27g1185 429 Pfam Alpha-amylase C-terminal beta-sheet domain 363 421 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lele27g1185 429 SUPERFAMILY (Trans)glycosidases 26 354 IPR017853 -
Lele27g1185 429 SMART aamy 24 361 IPR006047 GO:0005975
Lele27g1185 429 SUPERFAMILY Glycosyl hydrolase domain 366 422 - -
Lele27g1185 429 SMART alpha-amyl_c2 362 422 IPR012850 GO:0004556|GO:0005509|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1185 Lele-ChrLele27 18952394 18954022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1185 1 422 Glycoside Hydrolase AT4G25000 67.606 0.0 576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0892 25 5720420 5722054 Lele27g1185 27 18952394 18954022 hybridization
Lele26g0901 26 5789949 5793782 Lele27g1185 27 18952394 18954022 hybridization