Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1471 ATGGCGCCTGTGACCACAGGCGCTATTGTAGGCGTCGCGGCCATCTTCGTCTCAATCGCTTTCTCCTATTGCATCTGCGACCGTCGCACTAAATCTTCCTCCATAAACCCCCACTCACCTTCGCAAAAGAAGAAGAAATCGGGGAAGGGGCTCGTTGATGCCATTGGTAACACGCCTTTAATTCGAATCAACAGCCTCTCCGAAGCCACGGGTTGTGAAATTCTTGCGAAGTGCGAGTTTTTTAACCCTGGAGGGAGTGTGAAAGATCGAGTTGCAGTGAAAATCATTGAAGAGGCTTTATCATCTGGCCAGCTACGCCCAGGTGGGATAGTTACCGAAGGGAGTGTTGGAAGCACTGCCGTTAGCCTTGCCACTGTTGCACCTGCCTATGGATGCAAATGCCATTTGGTTATCCCAGATGATGTTGCAATTGAAAAGGCTCAAATAATTGAGGCCCTAGGAGCTACTGTTGAAAGAGTTAGACCAGTGTCAATCACCCACAAAGATCATTTTGTAAATGTTGCAAGAAGACGGGCATCAGAAGCAAATGAGTTGATGTTAGAACAGAGAAAAAAATTACAATTGAATGGTGGAAATATTAAACCGATTAATGGTTACAGCTCTGACGGGGATAGTCACAGTTCTGCTTTTTCTACGGATTGTCAAGGCGGCTTCTTTGCTGATCAGTTTGAGAATTTGGCGAACTTCAGGGCCCACTTTGAGGGTACAGGACCCGAGATTTGGAAACAGACGAATGGAAAGTTGGATGCATTTGTTGCAGGATCTGGCACGGGTGGCACTTTGGCTGGTGTTTCTAGATTTCTTCAGGAAAAGAATCCGAACATCAAGTGCTTCCTCGTAGATCCTCCAGGTTCTGGCTTGTTCAATAAGGTAACAAGGGGTGTGATGTATACCAGAGAGGAAGCAGAAGGAAAAAGGCTCAAGAATCCATTTGATACCATAACAGAAGGAATTGGATGTAACAGGATAACAAAGAATTTTATGATGGCCAAAGTTGATGGTGCTTTTCAAGCCACAGATATGGAGGCTGTTGAAATGTCTAGGTCTCTTTTGAAGAACGATGGACTATTTCTTGGGAGTTCTTCATCAATGAATTGTGTTGGAGCAGTTAGAGTGGCACAGTCGCTTGGCCCTGGTCATACAATTGTAACCATTCTCTGTGACAATGGAATGAGACATCTGAGTAGGTTCCACAATCCTCAGTATCTGTCTCAGCTTGGCTTGACTCCTAAAGCAACTGGATTAGAGTTTCTGGGATTAGATGCAGCTGAAGCCTGTGTTATGTGTGCCTTCTTTTTAAAGGGGGGGGAGTGATTCAAGTCTACTGTGAGATTTGAAAGTAAGTATTATGTTGAGACAGTGACTCGTGCTCCTGAGATACAAAGCAAGAGCTGCATCTCTTGCCTCGCCATGCCATCACCATCTTCAGGCCCATCATCACCGTCACTAGCTACACCATCATTGGCCACCATTGTCACCGCCTATTGCCACCATCGTCACTAG 1524 0.4567 MAPVTTGAIVGVAAIFVSIAFSYCICDRRTKSSSINPHSPSQKKKKSGKGLVDAIGNTPLIRINSLSEATGCEILAKCEFFNPGGSVKDRVAVKIIEEALSSGQLRPGGIVTEGSVGSTAVSLATVAPAYGCKCHLVIPDDVAIEKAQIIEALGATVERVRPVSITHKDHFVNVARRRASEANELMLEQRKKLQLNGGNIKPINGYSSDGDSHSSAFSTDCQGGFFADQFENLANFRAHFEGTGPEIWKQTNGKLDAFVAGSGTGGTLAGVSRFLQEKNPNIKCFLVDPPGSGLFNKVTRGVMYTREEAEGKRLKNPFDTITEGIGCNRITKNFMMAKVDGAFQATDMEAVEMSRSLLKNDGLFLGSSSSMNCVGAVRVAQSLGPGHTIVTILCDNGMRHLSRFHNPQYLSQLGLTPKATGLEFLGLDAAEACVMCAFFLKGGEXFKSTVRFESKYYVETVTRAPEIQSKSCISCLAMPSPSSGPSSPSLATPSLATIVTAYCHHRH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1471 507 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 77 95 IPR001216 GO:0006535
Lele25g1471 507 Gene3D - 237 401 IPR036052 -
Lele25g1471 507 Gene3D - 55 84 IPR036052 -
Lele25g1471 507 Gene3D - 85 190 IPR036052 -
Lele25g1471 507 Gene3D - 218 236 IPR036052 -
Lele25g1471 507 FunFam Cysteine synthase, putative 55 84 - -
Lele25g1471 507 Pfam Pyridoxal-phosphate dependent enzyme 53 395 IPR001926 -
Lele25g1471 507 FunFam Cysteine synthase 237 401 - -
Lele25g1471 507 PANTHER CYSTATHIONINE BETA-SYNTHASE 50 409 - -
Lele25g1471 507 CDD CBS_like 56 402 - -
Lele25g1471 507 Coils Coil 176 196 - -
Lele25g1471 507 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 50 406 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1471 Lele-ChrLele25 10998939 11004546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1471 55 402 Miscellaneous Gene Families AT3G04940 30.571 6.77e-35 131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1471 25 10998939 11004546 Lele27g0607 27 14049900 14054581 hybridization
Lele25g1471 25 10998939 11004546 Lele28g1496 28 11348416 11352382 hybridization