Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1496 ATGGCCTACCGGATTAAGTGGGCACCTCCCAAGGTAAGCCCATATCAGGCAAGAAGCAAGCCCATTTCAACCCGCCGCCTTGTCAAGTCGTTAATCGTTATAGTCCACGCCGTCTCCGGTCGTCATCAAGTTTTTGAAGGCGGCAACACTCACCAGGTGCGAACTCCAGCAATGGCGCCTGTGAGAACCACAGGCTCTATTGTCGGCGTGGTGGCAATCTTCGTCTCAGTCGCTTTCTCCTATTACATCTGCGACCGTCGCACTAAATCTTCCTCCATAAACCCCCACTCACCTTCGTCAAAGAAGAAATCGAGGAAGGGGCTCGTTGATGCCATTGGTAACACGCCTTTAATTCGAATTAACAGCCTCTCCGAAGCCACAGGTTGTGAAATTCTTGCGAAGTGCGAGTTTTTAAACCCTGGAGGGAGTGTGAAAGATCGTGTTGCAGTTAAAATCATTGAAGAGGCTTTATCATCTGGCCAGCTGTTCCCAGGTGGAATAGTTACTGAAGGGAGTGTTGGAAGCACTGCTGTTAGCCTTGCCACTGTTGCGCCTGCCTATGGATGCAAATGCCATGTAGTTATTCCAGATGATGTTGCAATTGAAAAGGCTCAGATAATTGAAGCCCTAGGAGCTACTGTTGAAAGAGTTAAACCAGTGTCAATCACTCACAAGGACCATTTTGTAAATGTTGCAAGAAGACGGGCATCAGAAGCAAATGAGTTGATGTTAGAACGGAGGAAAAAATTACAATTGAATGGTGGAAATATTAAACCGATTAATGGCTACAGATCTGATGGGGATAGTCACAGTTCAGCTTTTTCTGCAGATTGTCAAGGCGGATTCTTTGCTGATCAGTTTGAGAATTTGGCGAACTTCAGGGCCCACTTTGAGGGTACAGGACCTGAGATTTGGGAACAGACGAATGGAAAGTTGGATGCATTTGTTGCAGGAGCTGGCACTGGTGGCACTCTAGCTGGTGTTTCTAGGTTTCTTCAGGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGTTCTGGTTTGTTCAATAAGGTAACAAGGGGGGTGATGTACACCAGAGAGGAAGCAGAAGGAAAAAGGCTCAAGAATCCATTTGATACCATAACAGAAGGAATTGGATGTAACAGGATAACAAAGAACTTTATGATGGCCAAAGTTGATGGTGCTTTTCAAGCCACAGATATGGAGGCTGTTGAAATGTCTAGGTTTCTTTTGAAGAACGATGGACTATTTATTGGGAGTTCTTCATCAATGAATTGTGTTGGAGCAGTTAAAGTAGCACAGTCGCTTGGCCCTGGTCATACAATTGTAACCATTCTCTGTGACAATGGAATGAGACATCTGAGTAGGTTCCACAATCCTCAATACCTGTCTCAGCTTAGCTTGATTCCTAAAGCAACTGGACTAGAGTTTCTGGGTATCCAATGA 1458 0.4527 MAYRIKWAPPKVSPYQARSKPISTRRLVKSLIVIVHAVSGRHQVFEGGNTHQVRTPAMAPVRTTGSIVGVVAIFVSVAFSYYICDRRTKSSSINPHSPSSKKKSRKGLVDAIGNTPLIRINSLSEATGCEILAKCEFLNPGGSVKDRVAVKIIEEALSSGQLFPGGIVTEGSVGSTAVSLATVAPAYGCKCHVVIPDDVAIEKAQIIEALGATVERVKPVSITHKDHFVNVARRRASEANELMLERRKKLQLNGGNIKPINGYRSDGDSHSSAFSADCQGGFFADQFENLANFRAHFEGTGPEIWEQTNGKLDAFVAGAGTGGTLAGVSRFLQEKNPNIKCFLVDPPGSGLFNKVTRGVMYTREEAEGKRLKNPFDTITEGIGCNRITKNFMMAKVDGAFQATDMEAVEMSRFLLKNDGLFIGSSSSMNCVGAVKVAQSLGPGHTIVTILCDNGMRHLSRFHNPQYLSQLSLIPKATGLEFLGIQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1496 485 FunFam Cysteine synthase, putative 112 141 - -
Lele28g1496 485 PANTHER CYSTATHIONINE BETA-SYNTHASE 106 466 - -
Lele28g1496 485 FunFam Cysteine synthase 294 458 - -
Lele28g1496 485 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 106 461 IPR036052 -
Lele28g1496 485 Pfam Pyridoxal-phosphate dependent enzyme 110 452 IPR001926 -
Lele28g1496 485 Gene3D - 265 466 IPR036052 -
Lele28g1496 485 Gene3D - 139 264 IPR036052 -
Lele28g1496 485 CDD CBS_like 113 459 - -
Lele28g1496 485 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 134 152 IPR001216 GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1496 Lele-ChrLele28 11348416 11352382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1496 112 459 Miscellaneous Gene Families AT3G04940 30.769 4.86e-35 131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1471 25 10998939 11004546 Lele28g1496 28 11348416 11352382 hybridization
Lele26g1503 26 10938845 10942741 Lele28g1496 28 11348416 11352382 hybridization