Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1231 ATGACTTTCTTCTCCCAGTTGCACAAAACTAAAGCTTTGAAGCAGAGCGAAGAGACGCCCGGGATAAGACGGCGTTTCAACGTCGCTCTTTATTATCAGCTTCGAAGCAGAGCAAAAAGACGCACTATAGAAGACGGTGCTTCAACAAAGCTCCTCAATATCCCAGATAACTTTTGGATTGCTTTTCTTAAGAACATGGCTGCTGCTGCGGAAATTGGGGCTGCTGAATTCCTTAAGGGTACATGTAGACAAAGTCTGTTTTTTGTGAAGAAATCTCATTGGCAGAGGAGTAATTTGCTTTGGGGTACAGTTCGGAGTAGAAATCAAGTACGGGGTTCCACTAGAAGAGCCTTATCTTTGAGGTGCCATGGTCAAACAAATCCCCAAGCTGTGATTGCTGGGGGTGTTAGTAGCTCTGTAGATGATCATTCTAGCTTGGTTGAGAAGCCTGCCTTGGAAGTTATTCATTTTTACCGGGTTCCGTTGATCCAAGAAAGTGCAGCTGTTGAACTACTCAAGGAGATTAAAACTAAAATCTCTGATCAGATAGTGGCCTTGCAAACAGAGCAATGTTTCAATATTGGGATTGAAGCAGAACTTTCAAGTAACAAGCTTTCAGTACTTAAATGGCTTCTTCAAGAAACATATGAACCTGAAGCATTGCAAACTGAGAGCTTTCTTGAGAAAAGAAGGAAGGAAGGTTTGAGTACGGTTATAATAGAGGTTGGCCCGAGGTTGTCATTTACCACAGCTTGGTCTACTAATGCTGTTGCAATTTGTCGTGCATGTGAATTGACAGAGGTGACACGTTTGGAGCGTTCAAGGAGGTACTTGTTATATACTCAGGGTGATTTAGAAGATTTTCAAATCAATGAATTTGCAGCAATGGTGCATGATAGAATGACAGAATGTATTTACATCCAGAAGCTAACATCTTTTGAGACGAGTGTCATTCCAGAGGAAGTCTATCATATACCCATCATGGAGAAGGGGCAAAAGGCATTAGAAGAAATTAATCAACAAATGGGTTTAGCTTTTGATGACCAAGATATACAATACTACACTAAACTTTTCAGAGAGGATATTAAGCGTGATCCAACTAATGTTGAATTGTTTGATATTGCACAATCCAATAGTGAGCATAGCAGGCATTGGTTTTTTGCAGGAAAGATTATCATTGATGGGCAACTCATGGATAAGTCACTAATGCAGATTGTGAAAAGAACTTTACAAGCAAATCCAAATAACTCAGTTATTGGATTTAAGGATAACTCCAGTGCAATTAGGGGTTTCCCAGTGAAGCAGTTGCGACCAGTTTGGCCTGGGTCTGCGTGCCCATTAAACTTGACAGCACATGATCTAGATATCTTATTTACAGCTGAAACTCATAATTTTCCATGTGCAGTTGCTCCTTATCCTGGTGCAGAGACAGGTGCAGGAGGTCGCATTAGGGATACACATGCTACAGGAAGGGGTTCTTTTGTCCAGGCAGCTACAGCGGGTTATTGTGTTGGAAATCTCAACATGCCTGGTTCTTATGCTCAATGGGAAGACTCATCATTTACTTATCCTTCAAATCTAGCATCTCCTTTGCAGATCCTCCTTGATTCTAGCAATGGGGCATCTGATTATGGCAACAAATTTGGAGAGCCTTTGATTCAAGGCTTTTGCAGGACTTTTGGAATGAGACTTCCTAGTGGGGAAAGGAGGGAATGGTTGAAACCAATAATGTTTAGTGCTGGCATTGGACAGATTGACCATATTCATATATCGAAAGGAGAGCCCGACATTGGAATGTTAGTTGTTAAGATTGGAGGCCCTGCTTATCGTATTGGTATGGGAGGTGGGGCAGCCTCAAGCATGGTCAGTGGCCAGAATGATGCAGAGCTTGATTTCAATGCTGTACAACGTGGGGATGCTGAGATGGCTCAAAAATTGTATCGTGTAGTTCGTGCTTGCATAGAAATGGGAGAGAAAAATCCAATTATCAGCATTCATGATCAGGGGGCTGGTGGGAATTGTAATGTTGTGAAGGAAATTATATACCCAAAGGGTGCTGAGATAGATATCAGAGCAGTTGTGGTTGGTGATCACACACTGTCTGTTCTCGAAATTTGGGGTGCAGAATATCAAGAGCAAGATGCAATCTTGGTGAGGCCTGAAAGTCATGATCTTTTACAATCAATCTGTGATAGAGAAAAGGTATCAATGACTGTGATTGGTGCTATTAATGGTAGTGGACGTGTTGTTTTAGTTGACACCTTAGCAACTCAGAAGTGTCTATCAAATGGACTTCCTCCTCCTTCCCCTGCTGTAGATCTTGAATTGGAGAAGGTACTTGGTGACATGCCTAAAAAATCTTTTAATTTTTCTCGAGTTGTTTATGAGCAAAATCCATTTGATCTAGCTCCAACGGTCACAGTAATGGATTCTTTGAAGAGGGTATTGCATTTGCCATCTGTTTGCTCAAAGCGCTTCTTGACAACAAAAGTTGATAGGTGTGTTACTGGTCTCGTTGCACAGCAGCAAACTGTTGGTCCTTTGCAAATTCCTGTTGCTGATGTTGCAGTTATTGCTCAGACTTTTACTGATGTGACTGGAGGTGCATGTGCCATTGGGGAGCAACCAATCAAAGGTTTGTTAGACCCTAAAGCAATGGCAAGGTTAGCTGTTGGAGAAGCACTCACAAATCTTGTATGGGCAAAGGTCACTTCCCTATCTGATGTTAAGGCAAGCGGTAATTGGATGTATGCTGCCAAGCTTGATGGGGAAGGAGCTTCCATGTATGATGCTGCCATATCTTTGTCAGAAGCAATGATTGAACTTGGTATTGCTATAGATGGTGGGAAAGACAGCCTTTCTATGGCAGCACATGCTGGAGGTGAAGTTGTTAAGGCTCCAGGAAACCTTGTAATTAGTGTTTATGTAACTTGTCCTGATATTACAAAAACAGTGACACCTGATTTGAAACTTGAAGATGATGGTATTTTGCTTCATATTGATATGGCAAAAGGAAAGCGACGTTTAGGTGGATCTGCTCTTGCCCAGGTATTTGACCAAGTTGGGGATCAATGTCCTGATCTTGATGATGTTCCTTACTTTAAAAGGGTCTTTGAGACTGTCCAAGACCTTCTTACAGATGGATTGATCTCTGCTGGGCATGATATAAGTGATGGTGGGTTGCTAGTTTGTGCTTTAGAGATGGCATTTGCTGGAAATTGTGGGTTTACTTTGGACTTGACATCAAAAGGAAATAGTCTTTTTGAAACCCTTTATGCAGAAGAACTTGGCTTAATTGTTGAAGTGAGCAAGAAAAAGTTGAATAATGTGTTAGATAGGTTGAACAATGCTGGTGTGACCAGTGAGATTGTAGGACAAGTAACTGCTACTTCGTTGATAGAAGTTAAGGTTGATGGGGTGACTTGTTTGAAAGAAAGTACTTCTATCCTTAGGGATATGTGGGAAGAAACCAGTTTTCAGCTGGAAAAGTTCCAAAGGTTGGCATCTTGTGTTGATATGGAAAGAGAAGGATTAAAACATAGATATGCACCTTCATGGAAACCGTCCTTTTCTCCTTCATTCACCGACAAAAAGTACATGCTTGCAACTTCTAAACCAAAAGTTGCTGTGATCAGAGAAGAAGGCAGCAATGGAGATAGAGAAATGGCCGCAGCATTTTATGCTGCTGGTTTTGAACCATGGGATGTTACAATGTCAGACCTTCTTAATGGAGTGATCTCTTTGCAAGAGTTCCGTGGGATTGTTTTTGTAGGTGGATTTAGTTATGCAGACGTGCTTGATTCTGCCAAAGGATGGTCTGCTTGTATAAGATTTAATGAGCCTCTTATAAAGCAGTTTCAAGAATTTTATAACCGTTCAGATACTTTCAGCCTTGGAGTGTGCAATGGTTGTCAACTAATGGCTTTGTTGGGATGGGTACCAGGCCCACAGGTTGGAGGTGTTCTCGGTGCTGGTGGGGACCTTTCACAGCCAAGATTCATTCACAATGAGTCTGGGCGATTTGAGTGCCGCTTTACAAGTGTGACAATAAAGGACTCTCCGGCAATAATGTTTAAAGGTATGGAGGGTAGCACTCTTGGGGTATGGGCTGCACATGGTGAGGGAAAAGCATATTTCCCAGATGAAGGTGTGCTTGATTGTATTGTTCATTCTGAGTTAGCTCCTGTAAGATATTGTGATGATGGTGGCAATCCGACAGAGCAATATCCTTTCAATGTAAATGGCTCTCCTTTAGGGGTTGCTGCTATTTGTTCTCCAGATGGACGACATCTTGCCATGATGCCTCATCCAGAGCGTTGCTTCTTAATGTGGCAGTTCCCATGGTATCCAAAGCAGTGGGACGTGGACAAAAAGGGGCCTAGTCCATGGCTGCGCATGTTCCAAAATGCTAGAGAGTGGTGTTCTTTAAATGCTGGGCGTTGTCTTCTGCCATTCCCAAGCTTCTTTACTTGCTCAGGAAATTCTTCAGGTTTTGCAGTTACTGTTGCAGCTTTGTTATCGGTGGCACTAGTTGGATATAATCGATTCCAAACATCTGTTGTTCTTGATCCAATTCTTGCTAGGAGCTTCTCTGACGGATTAGGGTTGTATATTGTACATGTTCATCCAATTAAAGAGCATTGGGAAACCCTAAGGCCACCTGTCCTTCAAAGGCTGCCGTACTTCCTTAGTGAGAAAATAGATTAG 4707 0.4213 MTFFSQLHKTKALKQSEETPGIRRRFNVALYYQLRSRAKRRTIEDGASTKLLNIPDNFWIAFLKNMAAAAEIGAAEFLKGTCRQSLFFVKKSHWQRSNLLWGTVRSRNQVRGSTRRALSLRCHGQTNPQAVIAGGVSSSVDDHSSLVEKPALEVIHFYRVPLIQESAAVELLKEIKTKISDQIVALQTEQCFNIGIEAELSSNKLSVLKWLLQETYEPEALQTESFLEKRRKEGLSTVIIEVGPRLSFTTAWSTNAVAICRACELTEVTRLERSRRYLLYTQGDLEDFQINEFAAMVHDRMTECIYIQKLTSFETSVIPEEVYHIPIMEKGQKALEEINQQMGLAFDDQDIQYYTKLFREDIKRDPTNVELFDIAQSNSEHSRHWFFAGKIIIDGQLMDKSLMQIVKRTLQANPNNSVIGFKDNSSAIRGFPVKQLRPVWPGSACPLNLTAHDLDILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVQAATAGYCVGNLNMPGSYAQWEDSSFTYPSNLASPLQILLDSSNGASDYGNKFGEPLIQGFCRTFGMRLPSGERREWLKPIMFSAGIGQIDHIHISKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRVVRACIEMGEKNPIISIHDQGAGGNCNVVKEIIYPKGAEIDIRAVVVGDHTLSVLEIWGAEYQEQDAILVRPESHDLLQSICDREKVSMTVIGAINGSGRVVLVDTLATQKCLSNGLPPPSPAVDLELEKVLGDMPKKSFNFSRVVYEQNPFDLAPTVTVMDSLKRVLHLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIPVADVAVIAQTFTDVTGGACAIGEQPIKGLLDPKAMARLAVGEALTNLVWAKVTSLSDVKASGNWMYAAKLDGEGASMYDAAISLSEAMIELGIAIDGGKDSLSMAAHAGGEVVKAPGNLVISVYVTCPDITKTVTPDLKLEDDGILLHIDMAKGKRRLGGSALAQVFDQVGDQCPDLDDVPYFKRVFETVQDLLTDGLISAGHDISDGGLLVCALEMAFAGNCGFTLDLTSKGNSLFETLYAEELGLIVEVSKKKLNNVLDRLNNAGVTSEIVGQVTATSLIEVKVDGVTCLKESTSILRDMWEETSFQLEKFQRLASCVDMEREGLKHRYAPSWKPSFSPSFTDKKYMLATSKPKVAVIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGVISLQEFRGIVFVGGFSYADVLDSAKGWSACIRFNEPLIKQFQEFYNRSDTFSLGVCNGCQLMALLGWVPGPQVGGVLGAGGDLSQPRFIHNESGRFECRFTSVTIKDSPAIMFKGMEGSTLGVWAAHGEGKAYFPDEGVLDCIVHSELAPVRYCDDGGNPTEQYPFNVNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQFPWYPKQWDVDKKGPSPWLRMFQNAREWCSLNAGRCLLPFPSFFTCSGNSSGFAVTVAALLSVALVGYNRFQTSVVLDPILARSFSDGLGLYIVHVHPIKEHWETLRPPVLQRLPYFLSEKID 1568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1231 1568 FunFam Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial 984 1150 - -
Lele25g1231 1568 PANTHER PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE 153 1475 - -
Lele25g1231 1568 Gene3D - 979 1150 IPR036676 -
Lele25g1231 1568 Gene3D - 585 759 IPR036676 -
Lele25g1231 1568 SUPERFAMILY PurS-like 155 313 IPR036604 -
Lele25g1231 1568 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 1207 1451 - -
Lele25g1231 1568 CDD PurL_repeat2 854 1127 - -
Lele25g1231 1568 FunFam Phosphoribosylformylglycinamidine synthase, putative 585 763 - -
Lele25g1231 1568 SUPERFAMILY FGAM synthase PurL, linker domain 318 385 - -
Lele25g1231 1568 SMART GATase_5_2 1205 1474 - -
Lele25g1231 1568 FunFam Probable phosphoribosylformylglycinamidine synthase 379 584 - -
Lele25g1231 1568 Hamap Phosphoribosylformylglycinamidine synthase [purL]. 154 1475 IPR010073 GO:0004642|GO:0006189
Lele25g1231 1568 TIGRFAM FGAM_synt: phosphoribosylformylglycinamidine synthase 157 1473 IPR010073 GO:0004642|GO:0006189
Lele25g1231 1568 CDD PurL_repeat1 370 753 - -
Lele25g1231 1568 Pfam AIR synthase related protein, C-terminal domain 1008 1137 IPR010918 -
Lele25g1231 1568 Pfam AIR synthase related protein, C-terminal domain 598 751 IPR010918 -
Lele25g1231 1568 Pfam Formylglycinamide ribonucleotide amidotransferase linker domain 335 384 IPR041609 -
Lele25g1231 1568 SUPERFAMILY PurM C-terminal domain-like 993 1189 IPR036676 -
Lele25g1231 1568 Pfam CobB/CobQ-like glutamine amidotransferase domain 1205 1474 - -
Lele25g1231 1568 Gene3D - 1151 1475 IPR029062 -
Lele25g1231 1568 FunFam Phosphoribosylformylglycinamidine synthase, putative 1150 1475 - -
Lele25g1231 1568 CDD GATase1_FGAR_AT 1208 1471 - -
Lele25g1231 1568 SUPERFAMILY PurM N-terminal domain-like 386 593 IPR036921 -
Lele25g1231 1568 Gene3D - 793 978 IPR036921 -
Lele25g1231 1568 SUPERFAMILY PurM C-terminal domain-like 595 829 IPR036676 -
Lele25g1231 1568 FunFam Phosphoribosylformylglycinamidine synthase, putative 794 978 - -
Lele25g1231 1568 SUPERFAMILY Class I glutamine amidotransferase-like 1203 1474 IPR029062 -
Lele25g1231 1568 Pfam Formylglycinamide ribonucleotide amidotransferase N-terminal 191 307 IPR040707 -
Lele25g1231 1568 SUPERFAMILY PurM N-terminal domain-like 804 986 IPR036921 -
Lele25g1231 1568 FunFam Putative phosphoribosylformylglycinamidine synthase 318 378 - -
Lele25g1231 1568 Gene3D - 379 584 IPR036921 -
Lele25g1231 1568 Gene3D Phosphoribosylformylglycinamidine synthase, linker domain 318 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1231 Lele-ChrLele25 8195837 8202547 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1231 25 8195837 8202547 Lele25g1231 25 8195837 8202547 ECH
Lele25g1231 25 8195837 8202547 Lele27g0848 27 16514080 16521503 hybridization
Lele25g1231 25 8195837 8202547 Lele28g1240 28 8193470 8198254 hybridization