Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0815 ATGTCGAATCTCAAAGACGCAAATTTTACTGATAACGAAGGAGATTCGATTTCCTTCACCGATTTCCCTGAAGATGTTCATCTTTGTATCCTCTCCTTCCTCACACCATCTGAAATTGCCGCCTTCGCATGCACATCGAAGCGATTCGGCTCCCTCTGTAGCAACGATAGCAAACTCTGGTTTAGCCTGTGCGACAGGAGGTGGGGTTCGAAGACACAGATCGCGAAATGGGGCAATGGGAAAATTAGCTACCGCCTTCTGTACAAAACCCTCGACGAATGGGAGAATCTAATTGGATTTTGGCGTCGAAGCGGACCGGGAAGCATCGCTATTGCATCACCGTCGCTGGTTATCTTCGAGTGGGGCCATTCGTTCCTCGCCGGTTCCAGAGTTTCTCCGTCGAAATCTGGGTACGATATACTAAAGTCGCCATTTTTGCGGATGGGTCTATCGTCGGAAGGTCAGGTCGTGAATTTTCTCGATCCCGATGGGCGAACTGAAATGTCCGGTAAATTTGAGATTTCTGAGCAATTTGATATGCCTGGGAATGATCTGATTCCGGTCAATGTTAGTTTTATGGGGAAAACACACTTTGTTGTGGAGGAAAATCAAAACTTTATCCATTTCAATGGTCCAGACCAAAGGAAACATGGATTAAGGAGAAGTTCCAGTAGCACGAATCTGAGTTCAGACGATTGCAATGTTGGAGAAGATATGATTGGTATCGAAAGTGGATCACCGGGAAGCTTACCAGACAGATTGATGTCAGACATTTATCAGCATTTTGCAAACAGGACAAGCCCAGGTAGTGACATATCGAGGAAACAAAGGAGAAGAGAGAAGGAAAGGCTAGCCAGAAGAAAATGGGAGCCTGAGCATTACGTGAAGATTGTCAATTGTGCACCCACTCCATCACGCCCATTGCAAGGCCTATGGAAGGGTATTGATGATAACATGAGTTTAGCATTTTATCTTGTGGTGTATGATGACATAGGGGGCGTTGCTTGTCGGCAAGTTGGGAATCCTCCGGAGCGATTTCCCGGTCATTCCCCGGTCTTCTGGGCAACAAATGCCACATTTCTAGAATCACCTTTCTCCCCTGAGGAGGAGTATTTATATGACACTCGCATTCATCTCAGACCACTTGAAGCAGCCGGTGAGATTCACCAGCACTGCCTTTTGACAGAAAATGAAGTGGTAAATGCAATTCTCCACATAAACTCAAGCTATGAGTTGATTATTCCAGACCTTGCTGGAACAATGAATCCTAGGAGTGCAGAAGGAAGGATTTGGCAGTACCAGAATGGTACTTTTGGATTCGGCTTCCTTCGGGACAATTTTATAGTAGACCTGAAGAGTATTGCCTATGATGACTGTATCTAG 1383 0.457 MSNLKDANFTDNEGDSISFTDFPEDVHLCILSFLTPSEIAAFACTSKRFGSLCSNDSKLWFSLCDRRWGSKTQIAKWGNGKISYRLLYKTLDEWENLIGFWRRSGPGSIAIASPSLVIFEWGHSFLAGSRVSPSKSGYDILKSPFLRMGLSSEGQVVNFLDPDGRTEMSGKFEISEQFDMPGNDLIPVNVSFMGKTHFVVEENQNFIHFNGPDQRKHGLRRSSSSTNLSSDDCNVGEDMIGIESGSPGSLPDRLMSDIYQHFANRTSPGSDISRKQRRREKERLARRKWEPEHYVKIVNCAPTPSRPLQGLWKGIDDNMSLAFYLVVYDDIGGVACRQVGNPPERFPGHSPVFWATNATFLESPFSPEEEYLYDTRIHLRPLEAAGEIHQHCLLTENEVVNAILHINSSYELIIPDLAGTMNPRSAEGRIWQYQNGTFGFGFLRDNFIVDLKSIAYDDCI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0815 460 Pfam F-box domain 20 57 IPR001810 GO:0005515
Lele25g0815 460 ProSiteProfiles F-box domain profile. 16 63 IPR001810 GO:0005515
Lele25g0815 460 MobiDBLite consensus disorder prediction 271 285 - -
Lele25g0815 460 PANTHER F-BOX ONLY PROTEIN 48-RELATED 5 301 IPR045118 GO:0019005|GO:0031146
Lele25g0815 460 SUPERFAMILY F-box domain 9 92 IPR036047 GO:0005515
Lele25g0815 460 MobiDBLite consensus disorder prediction 264 285 - -
Lele25g0815 460 MobiDBLite consensus disorder prediction 211 234 - -
Lele25g0815 460 Gene3D - 7 97 - -
Lele25g0815 460 SMART fbox_2 22 62 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0815 Lele-ChrLele25 5252010 5253667 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0815 25 5252010 5253667 Lele27g1263 27 19439751 19441410 hybridization
Lele25g0815 25 5252010 5253667 Lele28g0812 28 5223252 5225135 hybridization