Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0291 ATGAGGGCCGCCATTGAATCCTCTGTAGTCGAGAGATTAGATGATGGGGAAAAGGAGAAGAAGAAGAAACGCCGATCCAATCGTCGATCCAAACAAACTTCTGCGTCATCAGCATCTTGTAATTCTGGAAATGAGATACACCGCATGTCATCAGAGTGCTCAGGAAACATCAGTACACCTACTCATGCCGCTGCTGCTTTGTCAAATAACCCTTCATTGAAGCAGCAGGAGATCAAGATTTGTTCCCCTAATGAGCAAGGGCTGTCCATGGCATCAAATGTTTCTCTCACCTCGAAGCCGCCAATGCATTTCAGTGAGCGTCAAATGGACCCTCTGGATTTGCAAAACATTCAACCTAATGGTGGAGGCATGTGCTCAAAATCATGTTCAGAGCCAGTCGGCTCACCAGCAACTTATATAAACAATGATCAGGCCCCTTCTGGTCAGACTGGGGTTTGTGTTCAGAGGAATTATTATAGTCCACACTGGTTGATGGAAGCTGTTGAGAAGGCTTTAGAGAAGGGGGATGTTTTTAAAGCCCTTTTTCGTGTCAATGCTCACAATAGACTTGAGGCATATTGTCAAATTGATGGAGTGCCAACCGATGTTCTTATTAGTGGAATTCCTGCCCAGAATAGAGCTGTTGATGGTGATACTGTTGCAGTTAAGATAGATCCTTTGGCTTTGTGGACTAAAATGAAAGGATCAAATGGTACTGGTAATGTTACTGCACCTGTTGAGGACTGTAACCTGCTTACAGAAGATAATGAAGTGGAGGGGAATATATCTACGCAAATAGGTAAGGTTGATACTGATTCTGAGTTTGCTAATTACAGCAATTGCCCTGGTCAAGACAAAGAGGATGACACCACTTACGTAAGTAATCTTTATACTGAAGAGATAGGGCTAAATAATAATTATGCTTCTCCTGCATCAACCAGCCCTTTAGATTCACTTGAACCAGTTACTCATGATGGTCATGATTCTGCTTCTGATAGCATGAACATCAGTTCTCATGGTGCACAATGTGTTGTTAATGCGGTGGAAAACATGTGTTTGTTGGTTAATTCTTTCCCTTCTAAAAGACCAACTGGCAGGGTGGTTGCAATTATTGAGAGGTCTCCACGCCGAGGGTCCATAATTGGCCATCTTAATGTTAAGCTGCCATTTCCTTTTAGAGAGATATGCAGAAAAGATGCAAAGAAGAACAAAAAATTGGTTTCTGGGTGTGAGTATATTCAGTTGATGCCAACTGATCCGAAGTTTCCAAAAATGGTACTCCTTGTTAGAGATTTGCCTAATTCCATTAAGAAGAGGCTGCAAAGTGGGGATGCTACACTTGAAATGGATCTGGTAGCTGCACGAATTGATAACTGGTCCCAAGAAAGTCCTTGTCCTCAAGCTCACATATTACATATTTTTGGAAGAGGTGGTGAAATTCAGCCACAGTTAGATGCAATTTTGTTTCAGAATGCAATCTGTGTGTCTGAATTTTCACCTGAAGCTTTGTCCTGCCTACCATCTGTTTCTTGGGAGGTGCCGCAGAAAGAATTTGAAAGTAGAACGGATCTCAGAAATTTGTGTGTATTTACCATTGATCCTTCAACGGCCTCTGATCTGGATGATGCACTGTCCATTGAGAAGTTATCTAATGGAAATTTTAGAGTAGGTATACACATTGCTGATGTGTCGTACTTTGTCTTACCAAACACAACAATAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTTTATATGGTGCAAAGAAAGTTATCAATGTTGCCACCATCATTTTCAGAGGATATAGGTTCCCTTAATCCTGGAGTGGATCGACTTGCAGTTTCAATGCTCCTGGACATAAACCTTGATGGGGATGTATTAGATCGTTGGATTGGCCGTACTGTGATAAAATCTTGTTGTAAGCTTTCTTATGAACACGCACAGGACATTATTGATGGGGTTATTGATGTTGAAAGTTCAAACACAATAGGAGATCACTATCCAAAGGTACATGGCCATTTTGAATGGGCTGATGTTATCACATCTGTGAAGAATCTATATGAAATTTCAAGAGTTTTGAAAGATAAGAGGTTTAATGATGGGGCTTTACGACTTGAAAGCCCCAAAGTTGTTTTCCAGTTTGATGAGGATGGAATTCCTTATGATAGTATGCTCTCAGAAAGAAAAGAATCAAATTTTCTTGTTGAAGAATTTATGCTTTTGGCTAATAGAACAGCTGCTGTAGTCATTTTTAGAGCATATCCTGATGCCGCATTATTGCGGAGGCATCCTGAACCTAATTGGCGGAAGCTGAGAGAGTTTGAGGCATTTTGTAACAAACATGGTTTAGAACTTGACACATCTTCATCTGGTCGACTCAATTGGTCTTTAGAGAAGATCAGGGAAAAGCTCAAGGGTGATCCCACGCTTTGTGATATTCTTATTTCATGTGCTACAAGGCCAATGCAGTTGGCACAATATTTCTGTAGTGGGGATTTAAAGGGCAAACGAAATGATTGGGGTCATTATGCTTTGGCTGTCTCTGCTTACACTCATTTTACATCACCTCTGCGTCGGTATCCTGATATTATTGTTCATCGGATGCTACTTGCTGTTATAGAGGCTGAGGAAATATATCTGGAGCATGAAAAGACATTGCAGGTTGACAAGGGAGAGGAAGTGCGAGAAAGATATTTCACTGGTATGAACTTTGGTAAGGAAGCTGCTGAATCTGTGGAAGGGAAAAAGGCACTATCAGCTTCTGCTTTGAAGCATGGAGTTCCTTTTACTGAATTACTTGCAGATGTTGCTGCTTATTGCAATTCGAGAAAGCTGGCTAGTAGAAATGTCAAGGATGCTAGTGATAAACTTTGCATGTGGGTTCTCCTCAAGAAGAAGGAGGTGTTAGTATCAGAAGCAAGAATACTGGGGTTGGGCCCAAGGTTCATGTCAATTTACGTTCAAAAACTAGCTATCGAGCGGCGAATATATTATGATGAAGTTCTGGGCTTGAATGTGGAATGGCTGGATGCGACCTCCACTTTGGTACTTAGCATGTGTACTGATAAACGTGCGTTTAGGAGAGGCAGCCTTGGTAAATGGAGGGCATTTGAAGAAGTTGTGTTGCTTTCTTGTCCGTATGACCTGAAAGACGCCAAAGGTGGTATTAATGAATGTGATGCAGGGAAAATGGGAGATGGGGGTCTTAGTAGCAGATCAGACAGTTCAGGGACTGAAATTGACCCTTCAGTTTTCCCCCTCACTCTACGTCTTCTTGGAACGGTTCCAGTAGCACTGCATGCTGTTGGTGGGGATGATGGACCTCTTGACATTGGGGTGAGGCTCTTCATGAGCTCCTACTTAAGATAA 3369 0.4191 MRAAIESSVVERLDDGEKEKKKKRRSNRRSKQTSASSASCNSGNEIHRMSSECSGNISTPTHAAAALSNNPSLKQQEIKICSPNEQGLSMASNVSLTSKPPMHFSERQMDPLDLQNIQPNGGGMCSKSCSEPVGSPATYINNDQAPSGQTGVCVQRNYYSPHWLMEAVEKALEKGDVFKALFRVNAHNRLEAYCQIDGVPTDVLISGIPAQNRAVDGDTVAVKIDPLALWTKMKGSNGTGNVTAPVEDCNLLTEDNEVEGNISTQIGKVDTDSEFANYSNCPGQDKEDDTTYVSNLYTEEIGLNNNYASPASTSPLDSLEPVTHDGHDSASDSMNISSHGAQCVVNAVENMCLLVNSFPSKRPTGRVVAIIERSPRRGSIIGHLNVKLPFPFREICRKDAKKNKKLVSGCEYIQLMPTDPKFPKMVLLVRDLPNSIKKRLQSGDATLEMDLVAARIDNWSQESPCPQAHILHIFGRGGEIQPQLDAILFQNAICVSEFSPEALSCLPSVSWEVPQKEFESRTDLRNLCVFTIDPSTASDLDDALSIEKLSNGNFRVGIHIADVSYFVLPNTTIDSEAQSRSTSVYMVQRKLSMLPPSFSEDIGSLNPGVDRLAVSMLLDINLDGDVLDRWIGRTVIKSCCKLSYEHAQDIIDGVIDVESSNTIGDHYPKVHGHFEWADVITSVKNLYEISRVLKDKRFNDGALRLESPKVVFQFDEDGIPYDSMLSERKESNFLVEEFMLLANRTAAVVIFRAYPDAALLRRHPEPNWRKLREFEAFCNKHGLELDTSSSGRLNWSLEKIREKLKGDPTLCDILISCATRPMQLAQYFCSGDLKGKRNDWGHYALAVSAYTHFTSPLRRYPDIIVHRMLLAVIEAEEIYLEHEKTLQVDKGEEVRERYFTGMNFGKEAAESVEGKKALSASALKHGVPFTELLADVAAYCNSRKLASRNVKDASDKLCMWVLLKKKEVLVSEARILGLGPRFMSIYVQKLAIERRIYYDEVLGLNVEWLDATSTLVLSMCTDKRAFRRGSLGKWRAFEEVVLLSCPYDLKDAKGGINECDAGKMGDGGLSSRSDSSGTEIDPSVFPLTLRLLGTVPVALHAVGGDDGPLDIGVRLFMSSYLR 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0291 1122 SMART RNB_2 521 875 IPR001900 GO:0003723|GO:0004540
Lele25g0291 1122 Pfam RNB domain 521 873 IPR001900 GO:0003723|GO:0004540
Lele25g0291 1122 Gene3D - 396 479 - -
Lele25g0291 1122 SUPERFAMILY Nucleic acid-binding proteins 483 965 IPR012340 -
Lele25g0291 1122 Gene3D - 153 246 - -
Lele25g0291 1122 SUPERFAMILY Nucleic acid-binding proteins 364 493 IPR012340 -
Lele25g0291 1122 MobiDBLite consensus disorder prediction 1 57 - -
Lele25g0291 1122 Pfam Dis3-like cold-shock domain 2 (CSD2) 412 491 IPR041505 -
Lele25g0291 1122 PANTHER RIBONUCLEASE 17 1119 - -
Lele25g0291 1122 SUPERFAMILY Nucleic acid-binding proteins 157 373 IPR012340 -
Lele25g0291 1122 FunFam DIS3-like exonuclease 2 148 250 - -
Lele25g0291 1122 MobiDBLite consensus disorder prediction 31 57 - -
Lele25g0291 1122 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1097 IPR028591 GO:0000175|GO:0034427
Lele25g0291 1122 ProSitePatterns Ribonuclease II family signature. 842 866 IPR022966 -
Lele25g0291 1122 MobiDBLite consensus disorder prediction 7 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0291 Lele-ChrLele25 1752339 1758304 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0291 25 1752339 1758304 Lele27g1794 27 22983429 22989376 hybridization
Lele25g0291 25 1752339 1758304 Lele28g0308 28 1828144 1834133 hybridization