Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0308 ATGAGGGCTGCCTCTGAATCCTCCGTTGTTGAGAGATTAGATGATGGGGAAAAGGATAAGAAGAAGAAACGCCGATCCAATCGTCGATCCAAACAAACTTCTGCGTCCTCAGCATCTTGTAATCCTGGAAATGAGATACACGGGATTTCATCAGAGCGCTCAGGAAATATCAGTACACCTACACATGCCGCTGCTGCTTCGTCAAACAACCCTTCATTGAAGCAGCAGAAGATCAGGATTTGTTCCCCTAATGAGCAAGAGCTGGCCATAGCGTCAAATGTTTCTTTCACCTCAATGCCACCGATGCATTTCAATGAACATCAAATGGACCCTCTGGATTTGCAAAACATTCAACCTAATGGTGCAGGTGTGTGCTCAAAATCATCTTCAGAGCCAGTCAGCTCATCAGCAACTTATACAAACAAAGACCTGGTCCCTTCTGGTCAGACTGGGGTTTGCGTTCAGAGAAATTATTATAGTCCACACTGGTCGATGGAAGCTGTTGAGAAGGCTTTAGAGAAGGGGGGTGTTTTTAAAGCCCTTTTTCGTGTCAATGCTCACAATAGACTCGAGGCATATTGTAAAATTGATGGAGTGCCAACTGATGTTCTCATAAGTGGAATTCCTACCCAGAATAGAGCTGTTGATGGTGATACCGTTGCAGTTAAGATAGATCCTGTGGCTTTGTGGACTAAAATGAAAGGATCAAATGGTATTGGTAATGTTACTGCTCCTGTAGAATATTTTAACCTGCTTTCAGAAGATAATGAAGTGGAGGGGAATATATCTATGCAACTAGGTAAGGTTGATGCTGATTCTGAGTTTGCTAATTACAGCAACTGCCCTGGTCAAGATAAAGAGGATGTTAATATTGACCACGCTACTTATGGAAGTAATCCTTATCCTGAAAAGAAAGGGCTAAATAATAATTATGCTTCTCCTGTTTTAACCAGCCCTTTAGATTCACTTGAACCAGTTACTCATGATGGTCATGATGCTGCTTCTGATAACTTGAATATCAGTTCTCATGGTGCACAAGGTGAAGTTATTAATGCTTTGGAAAAGATGTGTTTGTTGGTTAATTCTTTCCCTTCTAAAAGACCAACTGGCAGGGTGGTTGCAATTATTGAGAGGTCTCCACGCCGAGAGTCCATAATTGGCCATCTCAATGTTAAGCTGCCATTTCCTTTTAGAGACATATGCAGAAAAGATGCAAAGAAGAACAAAAAATTGGTTTCTGGGTGTGAGTATGTTCAGTTGATGCCAACTGATCCAAAATTTCCAAAAATGATACTCCTTGTTAGAGATTTGCCTAATTCCATTAAGAAGAGGCTGCAAAGTGGGGATGCTACACTTGAAATGGATCTGGTAGCCGCACGAATTGATAACTGGTCCCAAGAAAGTCCTTGCCCTCAAGCTCACATGTTGCATATTTTTGGACGAGGTGGTGAAATTCAGCCGCAATTAGATGCAATTTTGTTTCAGAATGCAATCTGTGTGTCTGAATTTTCACCTGAAGCTTTGTCCTGCCTTCCATATGTTTCTTGGGAGGTGCCACAGAAAGAATTTCAAAGTAGAATGGATCTTAGAAATTTGTGTGTACTTACAATTGATCCTTCAACTGCCTCTGATTTGGATGATGCACTGTCCATTGAGAAGTTATCTAATGGAAATTTTAGAGTAGGCATACACATTGCTGATGTATCATACTTTGTCTTACCGAACTCAACCATAGATTGTGAGGCTCAGTGTAGGTCAACAAGTGTTTATATGGTGCAAAGAAAGTTATCAATGTTGCCACCATCATTTTCAGAGGATATAGGTTCCCTTAATCCTGGAGTGGATCGACTTGCTGTTTCCATGCTCCTGGACATAGGCCTTGATGGAGATGTATTACATCGTTGGATTGGCCGTACTGTGATAAAATCTTGTTGTAAGCTTTCTTATGAACATGCACAGGACATTATTGATGGGGTTACTGATGTTGACAGTTCAAACACGATACATCACTATCCAAAGGTACATGGCCATTTTGAATGGGCTGATGTTATCACATCTGTGAAGAATCTATACGGAATTTCAAGAGTTTTGAAAGTTAAGAGGTTTAATGATGGGGCTTTACAACTTGAAAGCCCCAAACTTGTTGTCCTGTTTGATGAGGATGGAATTCCTTATGATAGTATGCTCTCAGAAAGAAAAGAATCAAATTTTCTTGTTGAAGAATTTATGCTTTTGGCTAATAGAACAGCTGCTGAAGTCATTTGTAGAGCATATCCTGATGCTGCATTATTGCGGAGGCATCCTGAACCTAATTTGCGGAAGCTGAGAGAGTTTGAGGCATTTTGTAACAAATATGGTTTAGAACTTGACACATCTTCATCTGGTCGACTCCATTGGTCTTTAGAGAAGATCAGGGAAAAGCTCAAGGGTGATCCCACACTTTGTGATATTCTTATTTCATATGCTACGAGGCCAATGCAGTTGGCACAATACTTCTGTAGTGGGGATTTAAAGGACAAACAAAATGGTTGGGGTCATTATGCTTTGGCTGTCTCTGCTTACACTCATTTTACATCACCTTTGCGTCGGTATCCTGATATTATTGTTCATCGGATGCTGCTTGCTGTTATAGAGGCTGAGGAAATATATCTGGAGCATGAAAAGACATTGCAGGTTAACAAGGGAGAGGAAGTGCGAGAAAGATATTTCACTGGTATGAACTTTGTTAAGGAAGCTGCTGAATCCGTGGAAGGAAAGAAGGCACTATCAGCTTCTGCTTTAAAGCATGGAGTTCCTTGTATTGAATTACTTGCAGATGTTGCTGCTTATTGCAATGCGAGAAAGCTAGCTAGTAGAGATGTCAAGGATGCTTGTGATAAACTGTACATGTGGGTTCTCCTCAAGAAGAAGGAGGGGTTAGTATCAGAAGCAAGAATACTGGGATTAGGCCCAAGGTTCATGTCAATTTATGTTCAAAAACTAGCTATTGAGCGGCGTATATATTATGATGAAGTTCCGGGCTTGAATGCAGAATGGCTGGATGTGACCTCCACTTTGGTACTTAGCATGTGTACTGATAAACGTGCGTTTAGGAGAGGTAGCCCTGGTAAATGGAGGTCATTTGAAGAAGTTGTGTTGCTTTCTTGTCCGTATGACCTGAAAGACGCCAAAGATGGTATCAATGCATGTGATGCAGTGAAAATGGGAGACAGGGATCTTAGTAGCAGCAGATCAGACAGTTCAGGGGCTGAAATTGACCCTGCAGTTTTCCCCCTCACTCTGCGTGTTCTTGGAACTGTTCCAGTAGCACTGCATGCTGTTGGTGGGGATGATGGACCTCTTGACATTGGGGTGAGGCTGTTCATGAGCTCCTACTTACGGTAA 3384 0.4158 MRAASESSVVERLDDGEKDKKKKRRSNRRSKQTSASSASCNPGNEIHGISSERSGNISTPTHAAAASSNNPSLKQQKIRICSPNEQELAIASNVSFTSMPPMHFNEHQMDPLDLQNIQPNGAGVCSKSSSEPVSSSATYTNKDLVPSGQTGVCVQRNYYSPHWSMEAVEKALEKGGVFKALFRVNAHNRLEAYCKIDGVPTDVLISGIPTQNRAVDGDTVAVKIDPVALWTKMKGSNGIGNVTAPVEYFNLLSEDNEVEGNISMQLGKVDADSEFANYSNCPGQDKEDVNIDHATYGSNPYPEKKGLNNNYASPVLTSPLDSLEPVTHDGHDAASDNLNISSHGAQGEVINALEKMCLLVNSFPSKRPTGRVVAIIERSPRRESIIGHLNVKLPFPFRDICRKDAKKNKKLVSGCEYVQLMPTDPKFPKMILLVRDLPNSIKKRLQSGDATLEMDLVAARIDNWSQESPCPQAHMLHIFGRGGEIQPQLDAILFQNAICVSEFSPEALSCLPYVSWEVPQKEFQSRMDLRNLCVLTIDPSTASDLDDALSIEKLSNGNFRVGIHIADVSYFVLPNSTIDCEAQCRSTSVYMVQRKLSMLPPSFSEDIGSLNPGVDRLAVSMLLDIGLDGDVLHRWIGRTVIKSCCKLSYEHAQDIIDGVTDVDSSNTIHHYPKVHGHFEWADVITSVKNLYGISRVLKVKRFNDGALQLESPKLVVLFDEDGIPYDSMLSERKESNFLVEEFMLLANRTAAEVICRAYPDAALLRRHPEPNLRKLREFEAFCNKYGLELDTSSSGRLHWSLEKIREKLKGDPTLCDILISYATRPMQLAQYFCSGDLKDKQNGWGHYALAVSAYTHFTSPLRRYPDIIVHRMLLAVIEAEEIYLEHEKTLQVNKGEEVRERYFTGMNFVKEAAESVEGKKALSASALKHGVPCIELLADVAAYCNARKLASRDVKDACDKLYMWVLLKKKEGLVSEARILGLGPRFMSIYVQKLAIERRIYYDEVPGLNAEWLDVTSTLVLSMCTDKRAFRRGSPGKWRSFEEVVLLSCPYDLKDAKDGINACDAVKMGDRDLSSSRSDSSGAEIDPAVFPLTLRVLGTVPVALHAVGGDDGPLDIGVRLFMSSYLR 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0308 1127 MobiDBLite consensus disorder prediction 31 76 - -
Lele28g0308 1127 Gene3D - 153 243 - -
Lele28g0308 1127 FunFam DIS3-like exonuclease 2 148 247 - -
Lele28g0308 1127 ProSitePatterns Ribonuclease II family signature. 846 870 IPR022966 -
Lele28g0308 1127 Gene3D - 401 484 - -
Lele28g0308 1127 SMART RNB_2 526 879 IPR001900 GO:0003723|GO:0004540
Lele28g0308 1127 Pfam RNB domain 526 877 IPR001900 GO:0003723|GO:0004540
Lele28g0308 1127 Pfam Dis3-like cold-shock domain 2 (CSD2) 417 496 IPR041505 -
Lele28g0308 1127 MobiDBLite consensus disorder prediction 1 76 - -
Lele28g0308 1127 SUPERFAMILY Nucleic acid-binding proteins 488 969 IPR012340 -
Lele28g0308 1127 Hamap DIS3-like exonuclease 2 [DIS3L2]. 20 1102 IPR028591 GO:0000175|GO:0034427
Lele28g0308 1127 SUPERFAMILY Nucleic acid-binding proteins 157 378 IPR012340 -
Lele28g0308 1127 MobiDBLite consensus disorder prediction 122 141 - -
Lele28g0308 1127 PANTHER RIBONUCLEASE 18 1124 - -
Lele28g0308 1127 SUPERFAMILY Nucleic acid-binding proteins 369 498 IPR012340 -
Lele28g0308 1127 MobiDBLite consensus disorder prediction 7 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0308 Lele-ChrLele28 1828144 1834133 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0291 25 1752339 1758304 Lele28g0308 28 1828144 1834133 hybridization
Lele26g0303 26 1793660 1799645 Lele28g0308 28 1828144 1834133 hybridization