Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1794 ATGAGGGCCGCCTGTGAATCCTCTGTAGTTGAGAGATTAGATGATGGGGAAAAGGAGAAGAAGAAGAAACGCCGATCCAATCGTCGATCCAAACAAACTTCTGCGTCCTCAGCATCTCGTAATTCTGGAAATGAGATACACGGCATGTCATCAGAGTGCTCAGGAAACATCAGTACACCTACTCATGCCGCTGCTGCTTTGTCAAACAACCCTTCATTGAAGCGGCAGGAGAGCAAGATTTGTTCCCCTAATGAGCAAGGGCTGTCCATGGCATCAAATGTTTCTTTCACCTCGATGCCTCTAATGCATTTCAGTGAGCGTCAAATGGACCCTCTGGATTTGCAAAACATTCAATCTAATGGTGGAGGCGTACCAGCAACTTATATAAACAAAGACCTGGCCCCTTCTGGTCAGACTGGGGTTTGTGTTCAGAGGAATTATTATAGTCCACACTGGTTGATGGAAGCTGTTGAGAAGGCTTTAGAGAAGGGGGATGTTTTTAAAGCCCTTTTTCGTGTCAATGCTCACAATAGACTTGAGGCATATTGTAAAATTGATGGAATGCCAACTGATGTTCTTATTAGCGGAATTCCTGCCCAGAATAGAGCTGTTGATGGTGATACTGTTGCAGTTAAGATAGATCCTTTGGCTTTGTGGACTAAAATGAAAGGATCAAATGGTACTGGTAATGTTACTGCACCTGTTGAGGATTGTAACCAGCTTACAGAAGATAATGAAGTGAAGGGGAATATATCTACACAAATAGGTAAGGTTGATGCTGATTCTGAGTTTGCTAATTACAGCAATTGCCCTGGTCAAGACAAAGAGGATGACACTACTTACGGAAGTAATCCTTATCCTGAAAAGAAAGGGCTAAATAATAATTATGCTTCTCCTGCTTCAACCAGCCCCTTAGATTCACTTGAACCAGTTACTCATGATGGTCATGATTCTGCTTCTGATAACATGAACACCAGTTCTCATGGTGCACAATGTAAAGTTGTTAATGCCATGGAAAACATGTGTTTGTTGGCTAATTCTTTCCCTTCTAAAAGACCAACTGGCAGGGTGGTTGCAATTATTGAGAGTTCTCCACGCCGAGAGTCCATAATTGGCCATCTAAATGTTAAGCTGCCATTTCCTTTTAGAGACATATGCAGAAAAGATGCAAAGAAGAACAAAAAATTGGTTTCTGGGTGTGAGTATATTCAGTTGATGCCAACTGATCCGAAGTTTCCAAAAATGATACTCCTTGTTAGAGATTTGCCTAATTCCATTAAGAAGAGGATGCAAAGTGGGGATGCTACACTTGAAATGGATCTGGTAGCTGCACGAATTGATAACTGGTCCCAAGAAAGTCCTTGTCCTCAAGCTCACATATTACAGATTTTTGGACGAGGTGGTGAAATTCAGACACAGTTAGATGCAATTTTGTTTCAGAATGCAATCTGTGTATCTGAATTTTCACCTGAAGCTTTGTCCTGCCTTCCATATGTTTCTTGGGAAGTGCCGCAGAAAGAATTTGAAAGTAGAACGGATCTCAGAAATTTGTGTGTATTTACCATTGATCCTTCAACTGCCTCTGATCTGGATGACGCACTGTCCATTGAGAAGTTATCTAATGGAAATTTTAGAGTAGGCATACACATTGCTGATGTGTCGTACTTTGTCTTACCGAACACAACAATAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTTTATATGGTGCAAAGAAAGTTATCAATGTTGCCACCATCATTTTCAGAGTATATAGGTTCCCTTAATCCTGGAGTGGATCGACTTGCAGTTTCAATGCTCCTGGACATAAACCTTGATGGGGATGTATTAGATCGTTGGATTGGCCGTACTGTGATAAAATCTTGTTGTAAGCTTTCTTATGAACACGCACAGGACATTATTGATGGGGTTATTGATGTTGAAAGTTCAAACGCAAGAGATCACTATCCAAAGGTACATGGCCATTTTGAATGGGCTGATGTTATCACATCTGTGAAGAATCTATATGAAATTTCAAGAGTTTTGAAATATAAGAGGTTTAATGATGGGGCTTTACGACTTGAAAGCCCCAAAGTTGTTTTCCTGTTTGATGAGGATGGAATCCCTTATGATAGTATGCTCTCAGAAAGAAAAGAATCAAATTTTCTTGTTGAAGAATTTATGCTTTTGGCTAATAGAACAGCTGCTGTAGTCATTTGTAGAGCATATCCTGATGCTGCATTATTGCGGAGGCATCCTGAACCTAATTGGCGAAAGCTGAGAGAGTTTGAGGCATTTTGTAACAAACAGGGTTTAGAACTTGACACATGTTCATCTGGTCGACTCCATTGGTCTTTAGAGAAGATCAGGGAAAAGCTCAAGGGTGATCCCACGCTTCGTGATATTCTTGTTTCATATGCTACAAGGCCAATGCAGTTGGCACAATATTTCTGTAGTGGGGATTTAAAGGGCAAACAAAATGATTGGGGTCATTATTCTTTGGCTGTCTCTGCTTACACTCATTTTACATCACCTCTGCGTCGGTATCCTGATATTATTGTTCATCGGATGCTACTTGCTGTTATAGAGGCTGAGGAAATATATCTGGAGCATGAAAAGACATTGCAGGTTGACAAGGGAGAGGAAGTGCGAGAAAGATATTTCACTGGTATGAACTTTGGTAAGGAAGCTGCTGAATCTGTGGAAGGGAAAAAGGCACTATCAGCTTCTGCTTTGAAGCATGGAGTTCCTTGTACTGAATTACTTTCAGATGTTGCTGCTTATTGCAATTCGAGAAAGCTAGCTAGTAGAAATGTCAAGGATGCTTGTGATAAACTTTACATGTGGGTTCTCCTCAAGAAGGAGGTGTTAGTATCAGAAGCAAGAATACTGGGGTTGGGCCCAAGGTTCATATCAATTTACGTTCAAAAGCTAGCTATTGAGCGGCGCATATATTATGATGAAGTTCCGGGCTTGAATGTGGAATGGCTGGATGCGACCTCCACTTTGGTACTTAGCATGTGTACTGATAAACGTGCGTTTAGGAGAGGCAGCCTTGATAAATGGAGGGCATTTGAAGAAGTTGTGTTGCTTTCTTGTCCGTATGACCTGAAAGACGCCAAAGGTGGTATTAATGAATGTGATGCAGGGAAAATGGGAGACGGGGATCTTAGTAGCAGATCAGACAGTTCAGGGACTGAAATTGACCCTTCAGTTTTCCCCCTCACTCTACGTCTTCTTGGAACGGTTCCAGTAGCACTGCATGCTGTTGGTGGGGATGATGGACCTCTTGACATCGGGGTGAGGCTCTTCATGAGCTCCTACTTAAGATAA 3333 0.4167 MRAACESSVVERLDDGEKEKKKKRRSNRRSKQTSASSASRNSGNEIHGMSSECSGNISTPTHAAAALSNNPSLKRQESKICSPNEQGLSMASNVSFTSMPLMHFSERQMDPLDLQNIQSNGGGVPATYINKDLAPSGQTGVCVQRNYYSPHWLMEAVEKALEKGDVFKALFRVNAHNRLEAYCKIDGMPTDVLISGIPAQNRAVDGDTVAVKIDPLALWTKMKGSNGTGNVTAPVEDCNQLTEDNEVKGNISTQIGKVDADSEFANYSNCPGQDKEDDTTYGSNPYPEKKGLNNNYASPASTSPLDSLEPVTHDGHDSASDNMNTSSHGAQCKVVNAMENMCLLANSFPSKRPTGRVVAIIESSPRRESIIGHLNVKLPFPFRDICRKDAKKNKKLVSGCEYIQLMPTDPKFPKMILLVRDLPNSIKKRMQSGDATLEMDLVAARIDNWSQESPCPQAHILQIFGRGGEIQTQLDAILFQNAICVSEFSPEALSCLPYVSWEVPQKEFESRTDLRNLCVFTIDPSTASDLDDALSIEKLSNGNFRVGIHIADVSYFVLPNTTIDSEAQSRSTSVYMVQRKLSMLPPSFSEYIGSLNPGVDRLAVSMLLDINLDGDVLDRWIGRTVIKSCCKLSYEHAQDIIDGVIDVESSNARDHYPKVHGHFEWADVITSVKNLYEISRVLKYKRFNDGALRLESPKVVFLFDEDGIPYDSMLSERKESNFLVEEFMLLANRTAAVVICRAYPDAALLRRHPEPNWRKLREFEAFCNKQGLELDTCSSGRLHWSLEKIREKLKGDPTLRDILVSYATRPMQLAQYFCSGDLKGKQNDWGHYSLAVSAYTHFTSPLRRYPDIIVHRMLLAVIEAEEIYLEHEKTLQVDKGEEVRERYFTGMNFGKEAAESVEGKKALSASALKHGVPCTELLSDVAAYCNSRKLASRNVKDACDKLYMWVLLKKEVLVSEARILGLGPRFISIYVQKLAIERRIYYDEVPGLNVEWLDATSTLVLSMCTDKRAFRRGSLDKWRAFEEVVLLSCPYDLKDAKGGINECDAGKMGDGDLSSRSDSSGTEIDPSVFPLTLRLLGTVPVALHAVGGDDGPLDIGVRLFMSSYLR 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1794 1110 MobiDBLite consensus disorder prediction 31 59 - -
Lele27g1794 1110 SUPERFAMILY Nucleic acid-binding proteins 472 954 IPR012340 -
Lele27g1794 1110 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1085 IPR028591 GO:0000175|GO:0034427
Lele27g1794 1110 Pfam RNB domain 511 862 IPR001900 GO:0003723|GO:0004540
Lele27g1794 1110 MobiDBLite consensus disorder prediction 266 308 - -
Lele27g1794 1110 MobiDBLite consensus disorder prediction 1 59 - -
Lele27g1794 1110 MobiDBLite consensus disorder prediction 264 327 - -
Lele27g1794 1110 PANTHER RIBONUCLEASE 20 1107 - -
Lele27g1794 1110 Gene3D - 386 469 - -
Lele27g1794 1110 SMART RNB_2 511 864 IPR001900 GO:0003723|GO:0004540
Lele27g1794 1110 SUPERFAMILY Nucleic acid-binding proteins 146 362 IPR012340 -
Lele27g1794 1110 FunFam DIS3-like exonuclease 2 137 240 - -
Lele27g1794 1110 SUPERFAMILY Nucleic acid-binding proteins 354 483 IPR012340 -
Lele27g1794 1110 Gene3D - 142 237 - -
Lele27g1794 1110 ProSitePatterns Ribonuclease II family signature. 831 855 IPR022966 -
Lele27g1794 1110 Pfam Dis3-like cold-shock domain 2 (CSD2) 402 481 IPR041505 -
Lele27g1794 1110 MobiDBLite consensus disorder prediction 7 21 - -
Lele27g1794 1110 MobiDBLite consensus disorder prediction 67 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1794 Lele-ChrLele27 22983429 22989376 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0291 25 1752339 1758304 Lele27g1794 27 22983429 22989376 hybridization
Lele26g0303 26 1793660 1799645 Lele27g1794 27 22983429 22989376 hybridization