Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1872 ATGGCCCAGAACCAGAGACACACAAGCGTCATCGAATTTCTGGGGGAAGAGATCGTGAGAATAATTGCACCAGTATCAATCTGTATGTTCTTGGTAGTCCTCTTGGTCTCAATCCTCAATACCAGTACAGACTCTTCTTCAGCATCAATCTCCAGTGTAGCCACCATTGCATACGGTGAGACCAGCTCAGACTCTTTCTGGGACAAATTCGTAGGTGCCCTTTTGAACTCTTTGGTCTTTGTAGCGGTTGTCACTGTTGCAAGTTTTGTTCTGGTCCTTCTCTTCTATCTTAGATGCACCAGATTCTTAAAACTATATATGGGGTTCTCTTCTTTTGTTATTTTGGGATTCTTGGGTGGTGAAATTGCCCTACTCTTTATTGAAGATTTTAGTATCCCTATTGATTGCGTAACTTTTTTCCTGGCTTTGTTCAATTTCGCTGTTGTTGGGGCATTGGCTGTCTTCATGTCCAAAATGGCAATTGTTGTGACTCAAGGATACTTGATTGTTATTGGAATGCTGGTTGCTTATTGGTTCACCATGTTACCTGAATGGACCACCTGGGTGCTTCTGGTTGCCATGGCACTGTATGATCTTGCTGCTGTTTTATTACCAGTTGGACCATTAAGACTTCTGGTAGAACTTGCAATCTCAAGAGATGAAGAAATTCCTGCACTGGTTTATGAGGCCAGGCCAGTGAACCATGACAAGGTGGATCCAAGTGGTGATGTAACTCAGAGGAGGGTGTGGAGAGATAGGAGCGTTGAGAATTCAATTCCACCAACTGATTCCAATCCAAGTGTCAACTCTGTGCTGGGTGAAACCGAAGATAGTGAATCAAACTCCAATCTAGATACGAATTTGGATAGGGAAAATGCTTTTTCAAATTCAAATCCTTCTACTAGCATCTATAATGACAGAAATCTGGTGAGAGCTGAAGAGGGACGGGTTTTAGAGACCGATTCAGAGCTCTCTGCGCCATTGATTGATCATGAAATGGATGTGCAGGTTCACAGAGGGGAAGATGAAGTGGCAAGTGAAAGCTTGATGCCGGAGGGGATTGGATTGGGGTCATCTGGAGCAATAAAGCTAGGGTTAGGAGATTTCATTTTCTACAGTGTTTTGGTTGGAAGGGCAGCGATGTATGATTATATGGCAGTGTATGCATGTTATCTTGCTATCATTGCTGGGCTGGGAATCACTTTGATGCTATTAGCATTGTATCAGAAAGCCTTACCGGCTCTTCCAGTGTCAATCTTGCTGGGAGTATCCTTTTATTTCTTGGCCAGGTTCTTGCTTGAACCGTTTGTTTTGCAATGTTCTTTGAACCTCCTCATGTTCTGA 1344 0.4323 MAQNQRHTSVIEFLGEEIVRIIAPVSICMFLVVLLVSILNTSTDSSSASISSVATIAYGETSSDSFWDKFVGALLNSLVFVAVVTVASFVLVLLFYLRCTRFLKLYMGFSSFVILGFLGGEIALLFIEDFSIPIDCVTFFLALFNFAVVGALAVFMSKMAIVVTQGYLIVIGMLVAYWFTMLPEWTTWVLLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNHDKVDPSGDVTQRRVWRDRSVENSIPPTDSNPSVNSVLGETEDSESNSNLDTNLDRENAFSNSNPSTSIYNDRNLVRAEEGRVLETDSELSAPLIDHEMDVQVHRGEDEVASESLMPEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDYMAVYACYLAIIAGLGITLMLLALYQKALPALPVSILLGVSFYFLARFLLEPFVLQCSLNLLMF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1872 447 FunFam Presenilin 336 438 - -
Lele24g1872 447 SMART psh_8 71 433 IPR006639 GO:0004190|GO:0016020
Lele24g1872 447 MobiDBLite consensus disorder prediction 257 297 - -
Lele24g1872 447 Pfam Presenilin 14 437 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele24g1872 447 MobiDBLite consensus disorder prediction 237 297 - -
Lele24g1872 447 PRINTS Presenilin family signature 181 188 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele24g1872 447 PRINTS Presenilin family signature 22 32 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele24g1872 447 PRINTS Presenilin family signature 198 215 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele24g1872 447 Gene3D Presenilin 345 439 IPR042524 -
Lele24g1872 447 PANTHER PRESENILIN 6 447 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele24g1872 447 MobiDBLite consensus disorder prediction 237 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1872 Lele-ChrLele24 23521376 23522719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1872 1 447 Miscellaneous Gene Families AT2G29900 61.745 1.09e-164 468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1872 24 23521376 23522719 Lele24g1872 24 23521376 23522719 ECH
Lele21g1959 21 26632129 26635268 Lele24g1872 24 23521376 23522719 hybridization
Lele22g1923 22 23951457 23952980 Lele24g1872 24 23521376 23522719 hybridization