Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1923 ATGCATGTGACCCTTTTTTCCTGTCCTGGGCCCGCGCGGGCATTGGCGCACCAACAGTTCGACAGGGTTCCGAACCAAAATGGGTGGAGGAAAATCACCGAAATGCCTAACACCCACCAGCAAAGACTCCCGCTGACTTACAGAAAGCTTGAATCCTTTTCATCTTTCAACTCTACCATGGCCCAGAACCAGAGACGCACAAGCGTCATCGACTTTCTGGGGGAAGAAATCGTGAGCATCATCGCACCAGTATCAATCTGTATGTTCTTGGTCGTCCTCTTGGTCTCAATCCTCAATACCAGTACCGACTCTTCTTCAGCATCAATCTCCAGTGTAGCCACCATTGCATACAGTGAGACCAGCTCAGACTCTTTCTGGGACAAATTCGTAGGTGCCCTTTTGAACTCTTTGGTCTTTGTAGCTGTTGTCACTGTTGCAAGTTTTGTTCTGGTCCTTCTCTTCTATCTTAGATGCACCGGATTCTTAAAACTATATATGGGATTCTCTTCTTTTGTTGTTTTGGGATTCTTGGGTGGTGAAATTGCCCTTCTCTTTATTGAAGATTTTAGTATCCCTATTGATTGCATAACTTTTTTCCTGGCTTTGTTCAATTTCGCTGTTGTTGGTGTATTGGCTGTCTTCATGTCCAAAATGGCAATTGTTGTGACTCAAGGATACTTGATTTTTATTGGAATGCTGGTTGCTTATTGGTTCACCATGTTACCCGAATGGACCACCTGGGTGCTTCTGGTTGCCATGGCACTGTATGATCTTGCTGCTGTTTTATTACCCGTTGGACCATTAAGACTTTTGGTAGAACTTGCAATCTCAAGAGATGAAGAAATTCCTGCACTGGTTTATGAGGCCAGGCCAGTGAACCATGACAAGGTGGATCCAAGTGGTGATGTAACTCAGAGGAGGAGGGTGTGGAGAGATAGGAGCGTTGAGAATTCAATTCCACCAACTGATTCCAATCCAAGTGTCAATTCTGTGCTGGGTGAATCCCAAGATAGTGAATCAAACTCCAATCTAGATACAAATTTGGATAGGGAAAATGCTTTTTCAAATTCAAATCCTTCTACTAGCATCTATAATGACAGAAATCTGGGGAGAGCTGAAGAGGGACGGGTTTTAGATACCGATTCAGAGCTCGCTGCGCCATTGATTGATCATGAAATAAATGTGCAGGTTCACAGAGGAGAAGATGGAGTGGCAAGAGAAAGCTTGATGCCAGAGGGGATTGGATTGGGGTCATCTGGAGCAATAAAGCTAGGGTTAGGAGATTTCATTTTCTACAGTGTTTTGGTTGGAAGGGCAGCGATGTATGATTATATGGCAGTGTATGCATGTTATCTTGCTATCATTGCTGGGCTGGGAATCACTTTGATGCTATTAGCATTGTATCAGAAAGCCTTACCTGCTCTTCCAGTGTCAATCATGCTGGGAGTATCCTTTTATTTCTTGACCAGGTTCTTGCTTGAACCGTTTGTTTTGCAATGTTCATTGAACCTCCTCATGTTATAA 1524 0.4383 MHVTLFSCPGPARALAHQQFDRVPNQNGWRKITEMPNTHQQRLPLTYRKLESFSSFNSTMAQNQRRTSVIDFLGEEIVSIIAPVSICMFLVVLLVSILNTSTDSSSASISSVATIAYSETSSDSFWDKFVGALLNSLVFVAVVTVASFVLVLLFYLRCTGFLKLYMGFSSFVVLGFLGGEIALLFIEDFSIPIDCITFFLALFNFAVVGVLAVFMSKMAIVVTQGYLIFIGMLVAYWFTMLPEWTTWVLLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNHDKVDPSGDVTQRRRVWRDRSVENSIPPTDSNPSVNSVLGESQDSESNSNLDTNLDRENAFSNSNPSTSIYNDRNLGRAEEGRVLDTDSELAAPLIDHEINVQVHRGEDGVARESLMPEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDYMAVYACYLAIIAGLGITLMLLALYQKALPALPVSIMLGVSFYFLTRFLLEPFVLQCSLNLLML 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1923 507 PANTHER PRESENILIN 46 506 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele22g1923 507 MobiDBLite consensus disorder prediction 296 368 - -
Lele22g1923 507 MobiDBLite consensus disorder prediction 317 367 - -
Lele22g1923 507 PRINTS Presenilin family signature 240 247 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele22g1923 507 PRINTS Presenilin family signature 81 91 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele22g1923 507 PRINTS Presenilin family signature 257 274 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele22g1923 507 Gene3D Presenilin 415 499 IPR042524 -
Lele22g1923 507 SMART psh_8 130 493 IPR006639 GO:0004190|GO:0016020
Lele22g1923 507 Pfam Presenilin 73 497 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele22g1923 507 FunFam Presenilin 398 498 - -
Lele22g1923 507 MobiDBLite consensus disorder prediction 296 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1923 Lele-ChrLele22 23951457 23952980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1923 60 506 Miscellaneous Gene Families AT2G29900 61.745 7.39e-163 465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1923 22 23951457 23952980 Lele22g1923 22 23951457 23952980 ECH
Lele22g1923 22 23951457 23952980 Lele23g0055 23 355030 356373 hybridization
Lele22g1923 22 23951457 23952980 Lele24g1872 24 23521376 23522719 hybridization