Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1717 ATGTTAGCGTTTCCTAGTGCATGTGGCAAACCACTTCCCTCCATTACCACGCTCGAGATTTTTCCCATTTTGGTTCAGCTTCAGCTTTTAACAGTGGAAATCTCCATTGGCAGGCAACTTATTAGGGGGATCGGTGATGTTGGTGACCAGCCAGTCATACTTCCTAAGGCTGGTTTTGAGTACGCTTCAGGATATCCATTAAACACCCCGAGTAGTAGAATGGAAGGTGACTTTGAGATGATCTACGTCGACAGAATAGGCTCATCCCCATCATTTAATGTGGCGATTGCTCCCTTTTCACTCTCTCTTCTTGGAGATGATGACGGTGATGACATTTGA 339 0.4543 MLAFPSACGKPLPSITTLEIFPILVQLQLLTVEISIGRQLIRGIGDVGDQPVILPKAGFEYASGYPLNTPSSRMEGDFEMIYVDRIGSSPSFNVAIAPFSLSLLGDDDGDDI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1717 112 ProSiteProfiles ApaG domain profile. 1 108 IPR007474 -
Lele24g1717 112 Pfam ApaG domain 38 81 IPR007474 -
Lele24g1717 112 Gene3D ApaG domain 27 107 IPR036767 -
Lele24g1717 112 PANTHER OS05G0170800 PROTEIN 39 107 - -
Lele24g1717 112 SUPERFAMILY ApaG-like 38 102 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1717 Lele-ChrLele24 22467973 22469126 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1061 17 21152506 21155195 Lele24g1717 24 22467973 22469126 CCT
Lele18g0478 18 2802040 2811276 Lele24g1717 24 22467973 22469126 CCT
Lele19g0498 19 2847599 2852430 Lele24g1717 24 22467973 22469126 CCT
Lele20g0958 20 15684432 15688476 Lele24g1717 24 22467973 22469126 CCT
Lele24g1717 24 22467973 22469126 Lele24g1717 24 22467973 22469126 ECH
Lele21g1779 21 25479747 25483292 Lele24g1717 24 22467973 22469126 hybridization
Lele22g1754 22 22819690 22820437 Lele24g1717 24 22467973 22469126 hybridization