Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1754 ATGAAGGAAGCTATTGCTGATGAAAGGTTTGAGGATGCAGCTAGATACCGTGATGAGCTAAAAGATATTGCTCCCCACTCTCTATTAAAATGTTCCAGTGAAGCCACAACCTTGGGAATAAGGGTTCAAGTTAGAAGTGCTTATATAGAGGGCAGAAGTCAACCTTCGAAAGTGATGTACTTCTTTGTATACAGAATAAGAATTACCAATAATTCAGACCGCCCCATTCAACTTTGTAGAAGGCATTGGATTATAACTGATGCTAATGGGAAGACAGAAAACGTGTGGGGATTCAATTTCAATTGTTCTTTATGA 315 0.3873 MKEAIADERFEDAARYRDELKDIAPHSLLKCSSEATTLGIRVQVRSAYIEGRSQPSKVMYFFVYRIRITNNSDRPIQLCRRHWIITDANGKTENVWGFNFNCSL 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1754 104 Gene3D ApaG domain 29 100 IPR036767 -
Lele22g1754 104 Pfam UvrB/uvrC motif 1 22 IPR001943 GO:0005515
Lele22g1754 104 ProSiteProfiles ApaG domain profile. 34 104 IPR007474 -
Lele22g1754 104 PANTHER OS05G0170800 PROTEIN 1 97 - -
Lele22g1754 104 Pfam ApaG domain 52 97 IPR007474 -
Lele22g1754 104 ProSiteProfiles UVR domain profile. 1 26 IPR001943 GO:0005515
Lele22g1754 104 SUPERFAMILY ApaG-like 36 97 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1754 Lele-ChrLele22 22819690 22820437 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1061 17 21152506 21155195 Lele22g1754 22 22819690 22820437 CCT
Lele18g0478 18 2802040 2811276 Lele22g1754 22 22819690 22820437 CCT
Lele19g0498 19 2847599 2852430 Lele22g1754 22 22819690 22820437 CCT
Lele20g0958 20 15684432 15688476 Lele22g1754 22 22819690 22820437 CCT
Lele22g1754 22 22819690 22820437 Lele22g1754 22 22819690 22820437 ECH
Lele22g1754 22 22819690 22820437 Lele23g0228 23 1565236 1567105 hybridization
Lele22g1754 22 22819690 22820437 Lele24g1717 24 22467973 22469126 hybridization