Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1436 ATGCTGAGCTCTGATGATGTGTTCTTCGACTCGGCAGATTATCTGTCACCTCAAGAATCTGATTTATTATTAGGTTCCAACGAGTTTGATGATTATGACATTTGGGCGAATGAACCTCAAAGTGTGAAGGAAAGAAGACAACGTTTTCTTGTGGAAATGGGTTTATCTGATATGTCTTCAGAACCCTCTTTGGAACTAGAGAGAATAACTAGGGACACCAATAATGAAGCTGTCTCAAACGTAGTTGAGAAAGAAAAAACTTCTGAAGCAAACATGGTCTCTGATGAAATGGAAGGGTTTCCCGAAGATGATGAAGTAGAGGTAAGCTTCCATGAAAACAGACACACAGAAGCTGAGATCAAGAAGAAGAAGAAGAAGAACTGGTGGGAGAGATTTGTGAACAAGAGGAAAGAAAGTGGAGGAGAGAAAATCAGATCAAAACTTAACAAAGTGGAAAACAATAATAAAACTCATAGGATAAAAGTGCAGCAGAACAAGAAGAGGTGGAAGGAGTTAAGTGGGTTATATGTTGGACAAGAGATTAAAAAAGCTCACAATGGAATTATAAGGACTATGAAATTCAGTCCCAGTGGGAAGTATCTTGCAACAGGAGGTGAAGATGGAGTAGTAAGAATATGGCGTGTTGTGTTAAAGGATATAACCAGTGAATGTTTCAATGCAGAAGACGACAACCTTGTTGCCAAAGTGAAACAAGACATGTTCTGTTCTTGGAAGAAGAAACAGTCAAGTCAAAAGAACTACCTTGTACTTCCAAACAAGGTTTTTCAAATTGAGGAATCACCAATGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGATATGGCATGGTCCAATTCAGAAATGCTGCTTTCATCTTCCATGGATAAAACCGTCCGTTTGTGGCAAATTGGATTTGATCAATGCTTAAGTGTATTTTGTCACATTGATTATGTGACATGCATACAAGTGAATCCAGTAGATGAAAATTACTTCATCAGTGGATCCATTGATGGAAAAGTCAGAATATGGGGATTACATGAAGAGAGGGTTGTTGACTGGGCAGATATACATGATGTGATTACTGCTATAAGTTACAAGCCAGAAGGAAAAGGTTTTGTAGTTGGCTCCATTTCAGGAACTTGCCACTTTTATGTTACTTCAGACAAATATTGCAGACATGAGGCACAGATTCATGTTGATAGAAAGAAGAGATCAAGGGGCAACAAAATTAGTGGCATTCAGTTTTCCCAAGAGAATCATCAGAGGGTTCTGATCACATCAGAAGATTCTAAATTTTGCTTAGTGGAAGGGGTTGATGTTGTCCAGAAATATAAAGGTCTTTCCAAGTCAGGAAGTCAGATGTGTGGGTCTTTTACATCAAGTGGAAAACACATAATTTCAGTTGGTGAGGATTCTCAAGTGTATATTTGGAACTCAAGTGACTTAAAACACAAGAAATCCTCTGCAGTTTGTGAATACTTTTTATCTGAAGGTGTTGTTGTAGCAGTACCTTGGTCAGGCATGAGCACAGCCCAAATGGTCACTACTGGTTTAGAACACTGTTCTTCTTTATCAGACTTACAACCCCAAATGCTTAAAGATAGAGGAGAATGCTTCTCTCACAGCAGTTGGTTCTCCATTGATCACACGTGTCGAGGTTCTGCTACGTGGCCCGAAGAGAAGCTTTCTGAAGTGTGGAATTCAATTTCTGCAGAAGAAGATTATTATAGCCATCAACAGAAGAAGAAGCTATGTCCAAAGGATCCATGGGGTTTGTCAATTGTGACAGCAAGTTGTGATGGAACTATAAAGACATTTCACAACTTTGGATTGCCTGTTAGGCTTTAG 1851 0.3906 MLSSDDVFFDSADYLSPQESDLLLGSNEFDDYDIWANEPQSVKERRQRFLVEMGLSDMSSEPSLELERITRDTNNEAVSNVVEKEKTSEANMVSDEMEGFPEDDEVEVSFHENRHTEAEIKKKKKKNWWERFVNKRKESGGEKIRSKLNKVENNNKTHRIKVQQNKKRWKELSGLYVGQEIKKAHNGIIRTMKFSPSGKYLATGGEDGVVRIWRVVLKDITSECFNAEDDNLVAKVKQDMFCSWKKKQSSQKNYLVLPNKVFQIEESPMQEFFGHSSDVLDMAWSNSEMLLSSSMDKTVRLWQIGFDQCLSVFCHIDYVTCIQVNPVDENYFISGSIDGKVRIWGLHEERVVDWADIHDVITAISYKPEGKGFVVGSISGTCHFYVTSDKYCRHEAQIHVDRKKRSRGNKISGIQFSQENHQRVLITSEDSKFCLVEGVDVVQKYKGLSKSGSQMCGSFTSSGKHIISVGEDSQVYIWNSSDLKHKKSSAVCEYFLSEGVVVAVPWSGMSTAQMVTTGLEHCSSLSDLQPQMLKDRGECFSHSSWFSIDHTCRGSATWPEEKLSEVWNSISAEEDYYSHQQKKKLCPKDPWGLSIVTASCDGTIKTFHNFGLPVRL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1436 616 Pfam WD domain, G-beta repeat 183 213 IPR001680 GO:0005515
Lele24g1436 616 Pfam WD domain, G-beta repeat 308 344 IPR001680 GO:0005515
Lele24g1436 616 Pfam WD domain, G-beta repeat 267 302 IPR001680 GO:0005515
Lele24g1436 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 354 IPR001680 GO:0005515
Lele24g1436 616 SMART WD40_4 389 437 IPR001680 GO:0005515
Lele24g1436 616 SMART WD40_4 174 214 IPR001680 GO:0005515
Lele24g1436 616 SMART WD40_4 306 345 IPR001680 GO:0005515
Lele24g1436 616 SMART WD40_4 265 303 IPR001680 GO:0005515
Lele24g1436 616 SMART WD40_4 438 479 IPR001680 GO:0005515
Lele24g1436 616 SMART WD40_4 347 386 IPR001680 GO:0005515
Lele24g1436 616 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Lele24g1436 616 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Lele24g1436 616 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Lele24g1436 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515
Lele24g1436 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 215 IPR001680 GO:0005515
Lele24g1436 616 Coils Coil 148 168 - -
Lele24g1436 616 SUPERFAMILY WD40 repeat-like 183 482 IPR036322 GO:0005515
Lele24g1436 616 Gene3D - 176 522 IPR015943 GO:0005515
Lele24g1436 616 PANTHER WD REPEAT DOMAIN 44 104 613 IPR040324 -
Lele24g1436 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 215 - -
Lele24g1436 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1436 Lele-ChrLele24 20318445 20321597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1436 269 400 Miscellaneous Gene Families AT5G08390 26.471 3.28e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1495 21 23259914 23262979 Lele24g1436 24 20318445 20321597 hybridization
Lele22g1484 22 20602846 20605993 Lele24g1436 24 20318445 20321597 hybridization