Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1484 ATGCTGAGCTCTGATGATGTGTTCTTCGACTCAGCAGATTATCTGTCGCCTCAAGAATCTGATTTATTATTAGGTTCCAACGAGTTTGATGATTATGACATTTGGGTGAATGAACCTCAAAGTGTGAAGGAAAGAAGACAACGTTTTCTTGTGGAAATGGGTTTATCTGATATGTCTTCAAAACCCTCCTTGGAACTAGAGAGAATAACTAGGGACACCAATAATGAAGCTGTCTCAAACGTAGTTGAGAAAGAAAAAACTTCTGAAGCAAACATGGTCTCTGATGAAATGGAAGTGTTTCCCGAAGATGATGAAGTAGATGTAAGCTTCCATGAAAACAGACACACAGAAGCTGAGATCAAGAAGGAGAAGAAGAAGAAGAACTGGTGGGAGAGATTTGTGAACAAGAGGAAAGAAAGTGGAGGAGAAAAAATCAGATCAAAACTCAACAAAGGGGAAAATAATAATAAAACTCATAGGATAAAAGTGAAGCAGAACAAGAAGAGGTGGAAGGAGTTAAGTGGGTTATATGTTGGACAAGAGATTAAAAAAGCTCACAATGGAATTATAAGGACTATGAAATTCAGTCCCAATGGGAAGTATCTTGCAACAGGAGGTGAAGATGGAGTAGTAAGAATATGGCGTGTTGTGTTAAAGGATATAACTAGTGAATGTTTCAATGCAGAAGACGACAACCTTGTTACCAAAGTGAAACAAGACATGTTCTGTTCTTGGAAGAAGAAACAGTCAAGTCAAAAGAACTACCTTGTACTTCCAAACAAGGTTTTTCAATTTGAGGAATCACCAATGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGACATGGCATGGTCTAATTCAGAAATGCTGCTTTCATCTTCCATGGATAAAACCGTCCGTTTGTGGCAAATTGGATTTGATCAATGCTTAAGTGTTTTTTGTCACAATGATTATGTGACATGCATTCAAGTGAATCCAGTAGATGAAAATTACTTCATCAGTGGATCCATTGATGGAAAAGTCAGAATATGGGGATTACATGAAGAGAGGGTTGTTGACTGGGCAGATATACATGATGTGATTACTGCTATAAGTTACAAGCCAGAAGGAAAAGGTTTTGTAGTTGGCTCCATTTCAGGAACTTGCCACTTTTATGTTACTTCAGACAAATATTGCAGACATGAGGCACAGATTCATGTTAATGGAAAGAAGAGATCAAGGGGCAACAAAATTAGTGGCATTCAGTTTTCCCAGGAGAATCATCAGAGAGTTCTGATCACATCAGAAGATTCCAAACTTTGCTTATTGGAAGGGGTCGATGTTGTCCAGAAATACAGAGGTCTTTCCAAGTCAGGAAGTCAGATGCGTGGGCCTTTTACATCAAGTGGAAAACACATAATTTCAGTTGGAGAGGATTCTCATGTGTATATTTGGAACTCAAGTGACATAAAACACAAGAAATCCGCTGCATTTTGTGAATACTTTTTCTCTGAAGGTGTTGTTGTAGCAGTACCTTGGTCAGGCATGAGCACAGCCCAAATGGTCACTACTGGTTTAGAACACTGTTCTTCTTTATCAGACTTACAGCCCCAAATGCTTAAAGATAGAGGAGAATGCTTCTCTCACAGCAATTGGTTCTCCATTGATCACACGTGTCGAGGTTCTGTTACGTGGCCCGAAGAGAAGCTTCCTGAAGTGTGGAATTCATTTTCTGCAGAAGAAGATGATTATAGCCATCAACAGAAGAAGAAGCTATGCCCAAAGGATCCATGGGGTTTGTCAATTGTCACAGCAAGTTGTGATGGAACTATAAAGACATTTCACAACTTTGGATTGCCGGTTAGGCTTTAG 1854 0.3927 MLSSDDVFFDSADYLSPQESDLLLGSNEFDDYDIWVNEPQSVKERRQRFLVEMGLSDMSSKPSLELERITRDTNNEAVSNVVEKEKTSEANMVSDEMEVFPEDDEVDVSFHENRHTEAEIKKEKKKKNWWERFVNKRKESGGEKIRSKLNKGENNNKTHRIKVKQNKKRWKELSGLYVGQEIKKAHNGIIRTMKFSPNGKYLATGGEDGVVRIWRVVLKDITSECFNAEDDNLVTKVKQDMFCSWKKKQSSQKNYLVLPNKVFQFEESPMQEFFGHSSDVLDMAWSNSEMLLSSSMDKTVRLWQIGFDQCLSVFCHNDYVTCIQVNPVDENYFISGSIDGKVRIWGLHEERVVDWADIHDVITAISYKPEGKGFVVGSISGTCHFYVTSDKYCRHEAQIHVNGKKRSRGNKISGIQFSQENHQRVLITSEDSKLCLLEGVDVVQKYRGLSKSGSQMRGPFTSSGKHIISVGEDSHVYIWNSSDIKHKKSAAFCEYFFSEGVVVAVPWSGMSTAQMVTTGLEHCSSLSDLQPQMLKDRGECFSHSNWFSIDHTCRGSVTWPEEKLPEVWNSFSAEEDDYSHQQKKKLCPKDPWGLSIVTASCDGTIKTFHNFGLPVRL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1484 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 355 IPR001680 GO:0005515
Lele22g1484 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 305 IPR001680 GO:0005515
Lele22g1484 617 SUPERFAMILY WD40 repeat-like 184 511 IPR036322 GO:0005515
Lele22g1484 617 SMART WD40_4 439 480 IPR001680 GO:0005515
Lele22g1484 617 SMART WD40_4 390 438 IPR001680 GO:0005515
Lele22g1484 617 SMART WD40_4 307 346 IPR001680 GO:0005515
Lele22g1484 617 SMART WD40_4 266 304 IPR001680 GO:0005515
Lele22g1484 617 SMART WD40_4 348 387 IPR001680 GO:0005515
Lele22g1484 617 SMART WD40_4 175 215 IPR001680 GO:0005515
Lele22g1484 617 PANTHER WD REPEAT DOMAIN 44 89 614 IPR040324 -
Lele22g1484 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 216 IPR001680 GO:0005515
Lele22g1484 617 Gene3D - 177 522 IPR015943 GO:0005515
Lele22g1484 617 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Lele22g1484 617 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Lele22g1484 617 PRINTS G protein beta WD-40 repeat signature 291 305 IPR020472 -
Lele22g1484 617 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Lele22g1484 617 Pfam WD domain, G-beta repeat 184 214 IPR001680 GO:0005515
Lele22g1484 617 Pfam WD domain, G-beta repeat 309 345 IPR001680 GO:0005515
Lele22g1484 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 305 - -
Lele22g1484 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 347 - -
Lele22g1484 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1484 Lele-ChrLele22 20602846 20605993 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1484 22 20602846 20605993 Lele23g0518 23 3795093 3798129 hybridization
Lele22g1484 22 20602846 20605993 Lele24g1436 24 20318445 20321597 hybridization