LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele24g1360	ATGGCCCCTCAGTGGCTGTTGGTTTGGGTAATGGCGTCCTTTCTGCATGGGAATGCAATGCCGATCACGTTTCCTGTGAGGCTGATCCATCGCTTCTCTGAAGAAATGAAGGCGCTCCAGGTTGCGAGTGTTGGTGGTGGTCGTAATATGTCTGGTGGCTGGCCGGAGAAGAAGAGTATGGAATACTACGAGATGCTTGTTAGCGGCGACCTTCTCAGGCACAAGATGAAGCTTCGAGCTCCACATCAGTTGCTTTTCCCATCTCACGGCAGCAAAACGATGTCGCTTGGAAACGACTTTGGCTGGTTACATTATACATGGATTGATATAGGGACGCCAAGTACTTCATTTCTTGTAGCACTGGATGCTGGGAGTGATCTACTTTGGGTTCCTTGTGATTGCTTAGAGTGTGCTCCTCTATCTGCAAGTTACTATGCCAATCTGGATAGAGATCTGAATGAGTATAGTCCATCTCGATCAACATCCAGCAAGAATCTATCTTGCAGCCATCAGTTATGTGAGATGGGTTCGGACTGTAAGAGTTCCAGGCAGCAGTGTCCTTACACTGCCAATTATGTCTCAGAGAATACATCAAGTTCCGGATTGTTAGTAGAGGACATATTGCATCTTGCGTCAAATGGTGATGGTGAATCGAACTCTACAGTTCAGGCTTCAGTCGTTATAGGGTGCGGTATGAAGCAAAGTGGTGGTTATTTGAATGGGGTTGCTCCAGATGGCCTTCTGGGTTTGGGAACCGGGGAAATTTCAGTTCCAAGCTCGCTTGCCAAATCAGGATTAATCCATAATTCTTTCTCAATGTGCTTTGACGATGATGATTCTGGTAGAATATTCTTTGGGGACCAGGGATCAGCCATCCACCAGTCTACTCCATTCCTGCCATTGGATGGAATATATTCAACATATGTTATTGGAGTGGAGGCATGTTGTATCAAGGATTCATGTCTTAAGATGACAAGCTTCAAAGCACAGGTTGATAGTGGAACATCGTTTACATTTCTTCCAGGCCATGTGTATGATGCAATTACTGAGGAGTTTGACCAACAAGTGAATGCTTCGAGATCTACCTTTGAAGGATCCCCTTGGGACTATTGCTATGCTTCTAGTTCACCGGAGCTGCCCAAGGTTCCCTCCCTCACATTTACGTTCCAACAGAATAGCAGCTTTATGGTTCATAATCCTGTATTTGTATTTTATGACAATCAGGAAGTTATTGGATTTTGTTTAGCCATACAGCCAACAGATGGAGATATGGGAACAATTGGACAGAACTTCATGACAGGCTACAGGCTGGTATTTGATAGGGAAAACATGAAGCTATCTTGGTTGCCCTCAAGTTGTGAGGATCTTGCTGGTAAGAGCACGTCCCCTCCAAATACGCCGCCGCCAAAACCCTTGCCGACAAATGAGCAGCAAAGAACCAATGGGCATGCAGTCGCTCCAGCTGTTGCTGTGAGAGCTCCCAACAAACCATCAACTGCTTCATCTTGGATAATGTCATGCCGGCGACAACATTGGCACATTTGCTTGTTCCTTCTTCTTCTTCAACTTGTAGTAGCCTCTATAATGCTTTATTAA	1596	0.4543	MAPQWLLVWVMASFLHGNAMPITFPVRLIHRFSEEMKALQVASVGGGRNMSGGWPEKKSMEYYEMLVSGDLLRHKMKLRAPHQLLFPSHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCLECAPLSASYYANLDRDLNEYSPSRSTSSKNLSCSHQLCEMGSDCKSSRQQCPYTANYVSENTSSSGLLVEDILHLASNGDGESNSTVQASVVIGCGMKQSGGYLNGVAPDGLLGLGTGEISVPSSLAKSGLIHNSFSMCFDDDDSGRIFFGDQGSAIHQSTPFLPLDGIYSTYVIGVEACCIKDSCLKMTSFKAQVDSGTSFTFLPGHVYDAITEEFDQQVNASRSTFEGSPWDYCYASSSPELPKVPSLTFTFQQNSSFMVHNPVFVFYDNQEVIGFCLAIQPTDGDMGTIGQNFMTGYRLVFDRENMKLSWLPSSCEDLAGKSTSPPNTPPPKPLPTNEQQRTNGHAVAPAVAVRAPNKPSTASSWIMSCRRQHWHICLFLLLLQLVVASIMLY	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele24g1360	531	Gene3D	Acid Proteases	79	287	IPR021109	-
	Lele24g1360	531	FunFam	Aspartyl protease family protein 1	90	287	-	-
	Lele24g1360	531	SUPERFAMILY	Acid proteases	98	455	IPR021109	-
	Lele24g1360	531	Gene3D	Acid Proteases	288	455	IPR021109	-
	Lele24g1360	531	Pfam	Xylanase inhibitor N-terminal	105	287	IPR032861	-
	Lele24g1360	531	PRINTS	Pepsin (A1) aspartic protease family signature	110	130	IPR001461	GO:0004190\|GO:0006508
	Lele24g1360	531	PRINTS	Pepsin (A1) aspartic protease family signature	425	440	IPR001461	GO:0004190\|GO:0006508
	Lele24g1360	531	PRINTS	Pepsin (A1) aspartic protease family signature	329	340	IPR001461	GO:0004190\|GO:0006508
	Lele24g1360	531	ProSiteProfiles	Peptidase family A1 domain profile.	104	449	IPR033121	-
	Lele24g1360	531	PANTHER	ASPARTYL PROTEASES	63	447	IPR001461	GO:0004190\|GO:0006508
	Lele24g1360	531	Pfam	Xylanase inhibitor C-terminal	326	447	IPR032799	-
	Lele24g1360	531	MobiDBLite	consensus disorder prediction	456	481	-	-
	Lele24g1360	531	FunFam	Aspartyl protease family protein 1	290	455	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele24g1360	Lele-ChrLele24	19656010	19660386	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele24g1360	80	456	Miscellaneous Gene Families	AT1G44130	25.686	2.73e-23	100

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele24g1360	24	19656010	19660386	Lele24g1360	24	19656010	19660386	ECH
	Lele23g0598	23	4482196	4486784	Lele24g1360	24	19656010	19660386	ECH
	Lele21g1417	21	22641399	22645943	Lele24g1360	24	19656010	19660386	hybridization
	Lele22g1407	22	19877578	19881832	Lele24g1360	24	19656010	19660386	hybridization