Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1336 ATGGGTGCTACGGGCTCTAAGCTCGAGAAAGCTCTTGGCGACCAATTTCCTGAAGGCGAGCGTTACTTTGGTCTTGAGAACTTTGGCAATACTTGTTACTGCAACAGCGTTCTGCAGATAACTTCCCAGAAGAAGAAAATAGGTGTCATTGCTCCCAAGCGATTTGTGCAGAGGTTAAAAAAACAGAATGAACTCTTCCGAAGCTATATGCACCAGGATGCACACGAATTCTTGAACTTTTTGTTAAATGAACTTGTGGACATTTTGGAGAAAGAGGCACAGGCTGCAAAAAGTGATCAAGAGACCTCACCCCCTTCTGATCCTGCAAATGTACCTAAGAATGGTTTAGCTAATGGTGCTAAAAAGGAGCCTTTAGTTACGTGGGTGCACAAAAATTTTCAGGGCATACTCACCAATGAGACAAGGTGCTTATGTTGCGAAACAGTGACGGCTAGGGATGAAACATTTTTTGATTTGAGTCTTGATATTGAGCAGAACAGTTCGATCACAAGCTGTTTGAAAAACTTCAGTTCCACTGAGACTCTGAATGCTGAAGACAAATTTTTTTGTGATAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAAATAAAGAAACCACCTCATATCTTGGTCATCCATCTTAAGCGGTTCAAGTACGTTGAACAGCTGGGTCGAAACAAGAAGCTGTCTTACAGGGTCGTCTTCCCTCTTGAGCTGAAGTTGGGCAACACTGTGGAACAAGCAGATATTGAGTACTCCCTATATGCAGTGGTCGTTCACGTTGGCAGTGGGCCCAACCACGGACATTATGTCAGCCTCGTGAAAAGCCATAACCACTGGTTATTTTTTGACGATGAAAATGTCGAGATGATCGATGAATCTGCCATGCAGACATTCTTTGGCTCCGCACAGGAATATTCCAGTAACACAGACCATGGGTACATTTTGTTCTATGAGAGCCTTGGCTCTGAAAACGGGAACTAG 990 0.4364 MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQITSQKKKIGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKSDQETSPPSDPANVPKNGLANGAKKEPLVTWVHKNFQGILTNETRCLCCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYVEQLGRNKKLSYRVVFPLELKLGNTVEQADIEYSLYAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAMQTFFGSAQEYSSNTDHGYILFYESLGSENGN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1336 329 SUPERFAMILY Cysteine proteinases 21 323 IPR038765 -
Lele24g1336 329 FunFam Ubiquitin carboxyl-terminal hydrolase 3 37 322 - -
Lele24g1336 329 MobiDBLite consensus disorder prediction 93 118 - -
Lele24g1336 329 Pfam Ubiquitin carboxyl-terminal hydrolase 45 320 IPR001394 GO:0004843|GO:0016579
Lele24g1336 329 Gene3D Cysteine proteinases 5 322 - -
Lele24g1336 329 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Lele24g1336 329 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 254 272 IPR018200 GO:0004843|GO:0006511
Lele24g1336 329 CDD Peptidase_C19G 24 321 - -
Lele24g1336 329 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 323 IPR028889 -
Lele24g1336 329 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1336 Lele-ChrLele24 19425391 19429731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1336 24 294 Miscellaneous Gene Families AT2G24640 27.389 9.20e-27 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1388 21 22370059 22374609 Lele24g1336 24 19425391 19429731 hybridization
Lele22g1381 22 19617725 19622009 Lele24g1336 24 19425391 19429731 hybridization