Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1381 ATGGGTGCTACGGGCTCTAAGCTCGAGAAAGCTCTTGGCGACCAATTTCCTGAAGGCGAGCGTTACTTTGGTCTTGAGAACTTTGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTTTACTTTTGTGTTCCATTTCGTGAACAATTGCTAGAGTATTATGGAAATAACAAAACAACAGCGGATGCAGAAGAAAATCTTTTAACTTGCTTAGCAGACTTATTTTCTCAGATAACTTCCCAGAAGAAGAAAATAGGTGTCATTGCTCCCAAGCGATTTGTGCAGAGGTTGAAAAAACAGAATGAACTCTTCCGAAGCTATATGCACCAGGATGCACACGAATTCTTGAACTTTTTGTTAAATGAACTTGTGGACATTTTGGAGAAAAAGGCACAGGCTGCAAAAAGTGATCAAGAGATCTCACCCCCTTCTGATCCTGCAAATGTACCTAAGAATGGTTTAGCTAATGGTGCTAAAAAGGAGCCTTTAGTTACGTGGGTGCACAAAAATTTTCAGGGCATACTCACCAATGAGACAAGGTGCTTATGTTGCGAAACAGTGACGGCTAGGGATGAAACATTTTTTGACTTGAGTCTTGATATTGAGCAGAACAGTTCGATCACAAGCTGTTTGAAAAACTTCAGTTCCACTGAGACTCTGAATGCTGAAGACAAATTTTTTTGTGATAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAAATAAAGAAACCACCTCATATCTTGGTCATCCATCTTAAGCGGTTCAAGTACGTTGAACAGCTGGGTCGAAACAAGAAGCTGTCTTACAGGGTCGTCTTCCCTCTTGAGCTGAAGTTGGGCAACACTGTAGAAGAAGCAGATATTGAGTACTCCCTATTTGCAGTGGTTGTTCACGTTGGCAGTGGGCCCAACCACGGACATTATGTCAGCCTCGTGAAAAGCCATAACCACTGGTTATTTTTTGACGATGAAAATGTGGAGATGATCGATGAATCTGCCATGCAGACATTCTTTGGCTCCGCACAGGAATATTCCAGTAACACAGACCATGGGTACATTTTGTTCTATGAGAGCCTTGGCTCTGGAAACGGGAACTAG 1107 0.4246 MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKTTADAEENLLTCLADLFSQITSQKKKIGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKKAQAAKSDQEISPPSDPANVPKNGLANGAKKEPLVTWVHKNFQGILTNETRCLCCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYVEQLGRNKKLSYRVVFPLELKLGNTVEEADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAMQTFFGSAQEYSSNTDHGYILFYESLGSGNGN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1381 368 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 362 IPR028889 -
Lele22g1381 368 SUPERFAMILY Cysteine proteinases 21 360 IPR038765 -
Lele22g1381 368 Gene3D Cysteine proteinases 5 361 - -
Lele22g1381 368 CDD Peptidase_C19G 24 360 - -
Lele22g1381 368 Pfam Ubiquitin carboxyl-terminal hydrolase 23 359 IPR001394 GO:0004843|GO:0016579
Lele22g1381 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Lele22g1381 368 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 361 - -
Lele22g1381 368 MobiDBLite consensus disorder prediction 136 157 - -
Lele22g1381 368 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 361 - -
Lele22g1381 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 293 311 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1381 Lele-ChrLele22 19617725 19622009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1381 24 333 Miscellaneous Gene Families AT2G24640 28.302 6.33e-30 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1381 22 19617725 19622009 Lele23g0625 23 4772480 4779032 hybridization
Lele22g1381 22 19617725 19622009 Lele24g1336 24 19425391 19429731 hybridization