Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1388 ATGGGTGCTACGGGCTCCAAGCTCGAGAAAGCTCTTGGCGACCAATTTCCTGAAGGCGAGCGTTACTTTGGTCTTGAGAACTTTGGCAATACTTGTTATTGCAACAGCGTTTTACAGATAACTTCCCAGAAGAAGAAAACAGGTGTCATCGCTCCCAAGAGATTTGTGCAGAGGTTAAAGAAACAGAATGAACTCTTCCGAAGCTACATGCACCAGGATGCACACGAATTCTTGAACTTTTTGTTAAATGAACTTGTGGACATTTTGGAGAAGGAGGCCCAGGCTGCAAAAAGTGATCAAGAGACCTCACCCCCTTCTGATCCTGCAAATGCACCTAAGAATGCCAATGGTTTAGCTAATGGCGCTAAAAAGGAGCCTTTAGTTACGTGGGTGCACAAAAATTTTCAGGGCATACTCACCAATGAGACAAGGTGCTTACGGTGCGAAACAGTTACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAGAACAGTTCGATCACAAGCTGTTTGAAAAACTTCAGTTCCACTGAGACTCTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAAATAAAGAAACCACCTCACGTCTTGGTCATCCATCTTAAGCGGTTCAAGTACGTTGAACAGCTGGGTCGAAACAAGAAGCTGTCTTACAGGGTTGTCTTTCCTCTTGAGCTGAAATTGGGCAACACTCTGGAAGATGCGGATATTGAGTATTCCCTATTTGCAGTGGTTGTTCATGTTGGCAGTGGGCCCAACCACGGGCATTATGTCAGCCTCGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTCGAGATGATTGATGAATCTGCTGTGCAGACATTCTTTGGCTCAGCACAGGAGTATTCCAGTAATACAGACCATGGGTACATTTTGTTCTATGAGAGCCTTGGCTCTGGAAACGGGAACTAG 996 0.4418 MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQITSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKSDQETSPPSDPANAPKNANGLANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYVEQLGRNKKLSYRVVFPLELKLGNTLEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGSGNGN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1388 331 Pfam Ubiquitin carboxyl-terminal hydrolase 44 322 IPR001394 GO:0004843|GO:0016579
Lele21g1388 331 MobiDBLite consensus disorder prediction 93 118 - -
Lele21g1388 331 CDD Peptidase_C19G 24 323 - -
Lele21g1388 331 Gene3D Cysteine proteinases 5 324 - -
Lele21g1388 331 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 325 IPR028889 -
Lele21g1388 331 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 256 274 IPR018200 GO:0004843|GO:0006511
Lele21g1388 331 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Lele21g1388 331 SUPERFAMILY Cysteine proteinases 21 323 IPR038765 -
Lele21g1388 331 FunFam Ubiquitin carboxyl-terminal hydrolase 3 38 324 - -
Lele21g1388 331 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1388 Lele-ChrLele21 22370059 22374609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1388 24 296 Miscellaneous Gene Families AT2G24640 26.582 1.25e-25 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1388 21 22370059 22374609 Lele23g0625 23 4772480 4779032 hybridization
Lele21g1388 21 22370059 22374609 Lele24g1336 24 19425391 19429731 hybridization