Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1298 ATGGCTGAAACCGGCGGTATAGTCCGGTTTCCGGGCAGTTTGGACCCACGAGCGGAAGAGTTCACGCCGAGAAATCAAACGTTATACCGGCCGGCTCAACTGCTCTACCCTTGCGCACCCACCATCGGCGTTCAGCTACAGCCTCAGCCTCAGCCTTTTTGTAATGCTGCTGCTACGGTTGGTGTTCCGTATCCGGCGTTCTGCCCCCCCGTGGCGGCGTACGTTGGGCCAGTTGCTATACCGGCCGCGCCGTCGTCGGCGCCCTCGTTCCCCTCGCCCACGCGGTCTCTGCTGCTCAGCTCCGTGCCGGCGGAGGGGGCGAGCGAGTCGATGTTGAGGAGGGAATTGGAAGTCTTTGGGGATGTGAGAGGAGTACAAATGGAGAGGGTTCGAGAAGGAATGGTGACTGTTCATTTCTACGACCTGAGACATGCAGAAGCGGCGTTAATGGCGATTCGGAAGCAGCACATGCAACAACAAACCCGGCTTCGTAATTTCTATTCCTCCGTGTTGAAGACTAAAAATTCGTCGTTGGAGCCTGATTATTACTCGCTCACCACCGCCCCACTTCCTCCTCCTGCTCCGACGGCCCGTGGGCTGGTCGCCGGTCGTGCAGTGTGGGCCCAGTTCATTGTGCCGGCTCACAACGCCGTCCCTCAAGGCCAGAACCAAGGAACCATCGTGATTTTCAATTTGGATTCGGAAATGCCCGCAGACACTATCCGACACACATTCGAGGCATTTGGTCCTGTGAGGGAACTGAGAGAGACGCCATTGAAGAAGAATCAGAGATTTGTGGAGTTCTTTGACGAGAGCCGGTTTCTAATTAAGGAAGATGCGATTGTTGAATTGAGTTGCAAAGATTCGAGAACAACTGTCATGATCAAGAACATACCCAATAAGTACAGTCAGAAGCTACTGTTGAATATGCTGGACAACCACTGCATTCACTGCAACGAGCAGATTGGCCGTGGCGGCGACGACAACAACGACGACCAACCCTTGTCGTCTTACGATTTCGTTTACCTACCCATTGATTTCAACAACAAGTGTAACGTGGGGTACGGGTTTGTGAACATGACATCACCGGAGGCGACGCTGAGGCTGTATAAAGCCTTTCATCTTCAACACTGGGAAGTTTTCAACTCCAGAAAAATTTGCGAAGTTACATACGCGAGGGTTCAGGGTTTGGAAACGTTGAAAGAGCACTTCAAGAACTCAAAGTTCCCATGCGAAGCGGAGCATTATTTGCCGGTGGTGTTTTCTCCGCCTCGAGATGGGAGGCAACTGACGGAGCCACTTCCGATTGTGGGTCAGAAGCCGCAGGCAGGAGAAGCCATTGATGTGGCCGACTGTAAAGCTATTAATGAGGATGACATGCAGAGCAGAAGCAGCGAAAGTGGCGGCGGAGAGGGTGATGATGATGATGATGATCACAGAAGAAGTGAACGAGGAGAAGTGGGGAGGGTTAACACATAA 1479 0.5281 MAETGGIVRFPGSLDPRAEEFTPRNQTLYRPAQLLYPCAPTIGVQLQPQPQPFCNAAATVGVPYPAFCPPVAAYVGPVAIPAAPSSAPSFPSPTRSLLLSSVPAEGASESMLRRELEVFGDVRGVQMERVREGMVTVHFYDLRHAEAALMAIRKQHMQQQTRLRNFYSSVLKTKNSSLEPDYYSLTTAPLPPPAPTARGLVAGRAVWAQFIVPAHNAVPQGQNQGTIVIFNLDSEMPADTIRHTFEAFGPVRELRETPLKKNQRFVEFFDESRFLIKEDAIVELSCKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGRGGDDNNDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLETLKEHFKNSKFPCEAEHYLPVVFSPPRDGRQLTEPLPIVGQKPQAGEAIDVADCKAINEDDMQSRSSESGGGEGDDDDDDHRRSERGEVGRVNT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1298 492 CDD RRM3_EAR1_like 290 396 IPR034458 -
Lele24g1298 492 SUPERFAMILY RNA-binding domain, RBD 287 395 IPR035979 GO:0003676
Lele24g1298 492 PANTHER RNA RECOGNITION MOTIF-CONTAINING 287 423 - -
Lele24g1298 492 MobiDBLite consensus disorder prediction 1 23 - -
Lele24g1298 492 MobiDBLite consensus disorder prediction 474 492 - -
Lele24g1298 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 170 IPR000504 GO:0003723
Lele24g1298 492 SMART rrm1_1 226 285 IPR000504 GO:0003723
Lele24g1298 492 SMART rrm1_1 96 164 IPR000504 GO:0003723
Lele24g1298 492 SUPERFAMILY RNA-binding domain, RBD 106 272 IPR035979 GO:0003676
Lele24g1298 492 MobiDBLite consensus disorder prediction 454 492 - -
Lele24g1298 492 Gene3D - 213 405 IPR012677 -
Lele24g1298 492 FunFam Terminal EAR1-like 1 251 401 - -
Lele24g1298 492 CDD RRM1_EAR1_like 94 163 - -
Lele24g1298 492 Pfam RNA recognition motif 2 331 405 IPR007201 -
Lele24g1298 492 Pfam RNA recognition motif 2 290 315 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1298 Lele-ChrLele24 19001185 19003981 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1298 24 19001185 19003981 Lele24g1298 24 19001185 19003981 ECH
Lele21g1345 21 21894826 21897632 Lele24g1298 24 19001185 19003981 hybridization
Lele22g1341 22 19201948 19204749 Lele24g1298 24 19001185 19003981 hybridization