Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1341 ATGGCTGAAACCGGTGGTATAGTCCGGTTTCCGGGGAGTTTGGACCCACGAGCGGAAGAGTTCACGCCGAGAAATCAAACGTTATACCGGCCGGCTCAACTGTTCTACCCTTGCGCACCCACCACCGGCGTTCAGCTTCAGCCTCAGCCTCTACCTTTTTGTAATGCTGCTGCTCCGGTTGGTGTTCCGTATTCGGCGTTCTGCCCCCCCGCGGCGGCGTACGTTGGGCCAGTTGCTATACCGGCCGCGCCGTCGTCGGCGCCCTCGTCCCCCTCGCCCACGCGGTCTCTGCTGCTCAGCTCCGTGCCGGCGGAGGGGGCGAGCGAGTCGATGTTGAGGAGGGAATTGGAAGTCTTTGGGGATGTGAGAGGAGTACAAATGGAGAGGGTTCGAGAAGGAATGGTGACTGTTCATTTCTACAACCTGAGACATGCAGAAGCGGCGTTAATGGCGATTCGGAAGCAGCACATGCAACAACAAACTCGGCTTCGTAATTTCTATTCCTCCGTGTTGAAGACTAAAATTTCGTCGTTGGAGCCGGATTATTACTCGCTCACCACCGCCCCACTTCCTCCTCCTCCTCCTCCACCGACGGCGCGTGGGCTGGTCGCCGGTCGTGCAGTGTGGGCCCAGTTCATTGTGCCGGCTCACAACGCCGTCCCTCAAGGCCAGAACCAAGGAACCATCGTGATTTTCAATTTGGATTCGGAAATGCCCGCAGACACTCTACGACACACATTCGAGGCATTTGGTCCTGTGAGGGAACTGAGAGATACGCCATTGAAGAAGAATCAGAGATTTGTGGAGTTCTTTGACGAGAGCCGGTTTCTAATTAAGGAAGATGCGATTGTGGAATCGAGTTGCAAAGATTCGAGAACAACTGTCATGATCAAGAACATACCCAATAAGTACAGTCAGAAGCTACTATTGAATATGCTGGACAACCACTGCATTCACTGCAACGAGCAGATTGGCCGTGGCGGCGACGACAACAACGACGACCAACCCTTGTCGTCTTACGATTTCGTTTACCTCCCCATTGATTTCAACAACAAGTGTAACGTGGGGTACGGGTTTGTGAACATGACATCACCGGAGGCGACGCTGAGGCTGTATAAAGCCTTTCATCTTCAACACTGGGAAGTTTTCAACTCCAGAAAAATATGTGAAGTTACATACGCGAGGGTTCAGGGTTTGGAAACGTTGAAAGAGCACTTCAAGAACTCAAAGTTCCCATGCGAGGCGGAGCATTATTTGCCGGTGGTGTTTTCTCCGCCTCGAGATGGGAGGCAACTGACGGAGCCACTTCCGATTGTGGGTCAGAAGCCGCAGGCAGGAGAAGCCATTGATGTGGCCGACTGTAAAGCTATTAATGAGGATGACAGGCAGAGCAGAAGCAGCGAAAGTGGCGGCGGAGAGGGTGATGATGATGATGATGACAACAGAAGTGAACGAGGAGAAGTGGGGAGGTTTAACACATAA 1482 0.529 MAETGGIVRFPGSLDPRAEEFTPRNQTLYRPAQLFYPCAPTTGVQLQPQPLPFCNAAAPVGVPYSAFCPPAAAYVGPVAIPAAPSSAPSSPSPTRSLLLSSVPAEGASESMLRRELEVFGDVRGVQMERVREGMVTVHFYNLRHAEAALMAIRKQHMQQQTRLRNFYSSVLKTKISSLEPDYYSLTTAPLPPPPPPPTARGLVAGRAVWAQFIVPAHNAVPQGQNQGTIVIFNLDSEMPADTLRHTFEAFGPVRELRDTPLKKNQRFVEFFDESRFLIKEDAIVESSCKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGRGGDDNNDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLETLKEHFKNSKFPCEAEHYLPVVFSPPRDGRQLTEPLPIVGQKPQAGEAIDVADCKAINEDDRQSRSSESGGGEGDDDDDDNRSERGEVGRFNT 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1341 493 Pfam RNA recognition motif 2 333 407 IPR007201 -
Lele22g1341 493 Pfam RNA recognition motif 2 292 317 IPR007201 -
Lele22g1341 493 SUPERFAMILY RNA-binding domain, RBD 289 397 IPR035979 GO:0003676
Lele22g1341 493 CDD RRM3_EAR1_like 292 398 IPR034458 -
Lele22g1341 493 Gene3D - 214 406 IPR012677 -
Lele22g1341 493 SMART rrm1_1 96 164 IPR000504 GO:0003723
Lele22g1341 493 SMART rrm1_1 228 296 IPR000504 GO:0003723
Lele22g1341 493 MobiDBLite consensus disorder prediction 455 493 - -
Lele22g1341 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 170 IPR000504 GO:0003723
Lele22g1341 493 MobiDBLite consensus disorder prediction 1 23 - -
Lele22g1341 493 MobiDBLite consensus disorder prediction 455 471 - -
Lele22g1341 493 SUPERFAMILY RNA-binding domain, RBD 106 274 IPR035979 GO:0003676
Lele22g1341 493 FunFam Terminal EAR1-like 1 254 403 - -
Lele22g1341 493 PANTHER RNA RECOGNITION MOTIF-CONTAINING 289 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1341 Lele-ChrLele22 19201948 19204749 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1341 22 19201948 19204749 Lele22g1341 22 19201948 19204749 ECH
Lele22g1341 22 19201948 19204749 Lele23g0680 23 5259799 5262675 hybridization
Lele22g1341 22 19201948 19204749 Lele24g1298 24 19001185 19003981 hybridization