Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1345 ATGGGAGAAACCGGTGGTGTTGTCCGGTTTCCGGGGAGCTTGGACCCACGAGCGGAAGAGTTCACGCCGAGAAATCAAACGCTGTACAGGCCACCGGCTCAACTGTTCTACCCTTGCGCACCCAACACCGGAGTTCAGCTTCAGCCATTGCCGTTTTGTAATGCTGCACCGGTTGGTGTTCCGTATCCGCCGCTGTTCTCCCCCGCGTCGGCGTACGTTAGCTCAGTGGCTCCGCCGGTGGCTCCGTCGTCATCAGGCTCCCACTCGCCCAAGCGGTCGCTGTTGCTCAGTTCGGTGCCAGCGGTGGGGGCGAGCGAGTCGATGTTGAGGAGGGAATTGGAAGTCTTTGGGGATGTAAGAGGAGTACAAATGGAGAGGATTCGAGAAGGAATAGTGACTGTTCATTTCTACGACCTGAGACATGCAGAGACGGCGTTAATGGCGATTCGAAAGCAGCACATGCAACAACAAACGAGGCTTCGTAATTTCTATTCCTCCGTGTTTAAGTCTCACAATTCGGCGTTGGAGCCGGATTATCACTCCTTCACCACCGCCCCACTCCCGACGCCTCCCCCGACGGCTCGTGGGCTGGTCGCCGGTCGTGCAGTGTGGGCCCAGTTCATTGTCCCAGCTCACAACGCCGTTCCTCATGGACAAAACCAGGGAACCATCGTGATTTTCAATTTGGATTCGGAAATGCCCGCAGAGACCCTCCGACACACATTCGAGGCATTCGGTCCTGTGAGGGAACTGAGAGAGACGCCATTGAAGAAGAATCAGAGATTTGTGGAGTTCTTTGACGTTAGAGATGCGGCTAAGGCCTTGAATGAGATGAACGGCAAAGAAATTTACGGTAAAGCCGTTGTGATTGAGTTCAGTCGTCCCGGTGGTCATGGCCGGAAGTCCTTCAACCACAACCACCACCACCCTACTACTACAATCTCCAAAAACGCAATGCCGTTCAATTTCCAACCTCAATCTCCTCATCCTCCTTCGCCCCCATTGGCCCAAAAAAACGCACGTCGTTTTTCTCCTCTTCCTTCTCCTCGTGCTCATCTTCCTCAGCAGCCCCAGTCCTTGCCCAGGAAAACGGCTCCAAACAAAGCTAACGGAAACACAGACACTAATCTGGAGAGTGCGAATTCTGTTTCTCTGGAAACGACGAACTTGAGTTGGGTAGTAGAAGAGAAGCAATCGGAAGGGCCTACGTCGAGAAACGCCGCCATGAAGAACTGTGGCGGCGAGGCGGCGGCGGGAAGCACGAAGCAGCAACCCAGAAGTAGGAATTGGAAGGGGAAACGAGGGAAGAAGCAGGAGAGCCGGTTTCTAATTAAGGAAGATGCGATTGTGGAATCGAGTTGCAAAGATTCGAGAACTACTGTCATGATCAAGAACATCCCCAATAAGTACAGTCAGAAGCTACTATTGAACATGTTGGACAACCACTGCATTCACTGCAACGAGCAGATAGGCCATGGCGGCGACGGCGACGACCAACCCTTGTCGTCTTACGATTTCGTTTACCTCCCCATTGATTTCAACAACAAGTGTAACGTGGGGTATGGGTTTGTGAACATGACTTCACCGGAGGCGACGTTGAGACTGTATAAAACATTTCATCTTCAGCATTGGGAAGTTTTCAACTCCAGAAAAATATGCGAAGTTACATACGCGAGGGTTCAGGGTTTGGAAGCGTTAAAAGAGCATTTCAAGAACTCAAAGTTCCCATGCGAGGCGGAGCATTACTTGCCGGTGGTGTTTTCTCCGCCTCGAGATGGGAGGCAACTTACAGAGCCACTTCCGATCGTGGGTCAGAAGCCGCAGCCAGGAGGAGAAGCCATTGATGTGGCCTTGGCCGACTGTAAAGCTACTAATGACGAGGACGACGACTGTGTGGTGGAGGGTAAGAATAGAGTAGGTAGCGGCGGCGGCAAAGTACAGAAGCATGACATGCAGAGCAGTTGCAGCGAAAACGGCGGCGGAGAGGGTAATGATGATGACGACGACGACAGAAGAAGTGAAGGAGGAGAAATGGGAAGGAATTAA 2046 0.5239 MGETGGVVRFPGSLDPRAEEFTPRNQTLYRPPAQLFYPCAPNTGVQLQPLPFCNAAPVGVPYPPLFSPASAYVSSVAPPVAPSSSGSHSPKRSLLLSSVPAVGASESMLRRELEVFGDVRGVQMERIREGIVTVHFYDLRHAETALMAIRKQHMQQQTRLRNFYSSVFKSHNSALEPDYHSFTTAPLPTPPPTARGLVAGRAVWAQFIVPAHNAVPHGQNQGTIVIFNLDSEMPAETLRHTFEAFGPVRELRETPLKKNQRFVEFFDVRDAAKALNEMNGKEIYGKAVVIEFSRPGGHGRKSFNHNHHHPTTTISKNAMPFNFQPQSPHPPSPPLAQKNARRFSPLPSPRAHLPQQPQSLPRKTAPNKANGNTDTNLESANSVSLETTNLSWVVEEKQSEGPTSRNAAMKNCGGEAAAGSTKQQPRSRNWKGKRGKKQESRFLIKEDAIVESSCKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGHGGDGDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKTFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEAEHYLPVVFSPPRDGRQLTEPLPIVGQKPQPGGEAIDVALADCKATNDEDDDCVVEGKNRVGSGGGKVQKHDMQSSCSENGGGEGNDDDDDDRRSEGGEMGRN 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1345 681 CDD RRM1_EAR1_like 92 160 - -
Lele21g1345 681 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 288 IPR000504 GO:0003723
Lele21g1345 681 MobiDBLite consensus disorder prediction 395 439 - -
Lele21g1345 681 MobiDBLite consensus disorder prediction 308 323 - -
Lele21g1345 681 MobiDBLite consensus disorder prediction 298 383 - -
Lele21g1345 681 MobiDBLite consensus disorder prediction 353 383 - -
Lele21g1345 681 MobiDBLite consensus disorder prediction 627 681 - -
Lele21g1345 681 SMART rrm1_1 93 161 IPR000504 GO:0003723
Lele21g1345 681 SMART rrm1_1 223 291 IPR000504 GO:0003723
Lele21g1345 681 PANTHER RNA RECOGNITION MOTIF-CONTAINING 455 588 - -
Lele21g1345 681 Gene3D - 216 306 IPR012677 -
Lele21g1345 681 Pfam RNA recognition motif 2 500 571 IPR007201 -
Lele21g1345 681 Pfam RNA recognition motif 2 458 483 IPR007201 -
Lele21g1345 681 CDD RRM3_EAR1_like 458 562 IPR034458 -
Lele21g1345 681 SUPERFAMILY RNA-binding domain, RBD 214 304 IPR035979 GO:0003676
Lele21g1345 681 SUPERFAMILY RNA-binding domain, RBD 423 543 IPR035979 GO:0003676
Lele21g1345 681 SUPERFAMILY RNA-binding domain, RBD 78 154 IPR035979 GO:0003676
Lele21g1345 681 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 295 IPR000504 GO:0003723
Lele21g1345 681 FunFam Terminal EAR1-like 1 408 567 - -
Lele21g1345 681 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1345 Lele-ChrLele21 21894826 21897632 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1345 21 21894826 21897632 Lele21g1345 21 21894826 21897632 ECH
Lele21g1345 21 21894826 21897632 Lele23g0680 23 5259799 5262675 hybridization
Lele21g1345 21 21894826 21897632 Lele24g1298 24 19001185 19003981 hybridization