Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1296 ATGTCTCGTCACGCCATCTCCGGCGTAACGCCGGAATCCCTATCGGCGTCGGGTCGGAGCTCGGAGAAGCTAAGCCTGCCGTCACTGCAATCTAAAATGAAGTGTGACCCTGAAGGATACGAGTCTGAGCTAGTCCTCCTCTACAACCAATTCAATTCGTCATTGGAACTCTTTCAGCAACAAGCTGCGATGAATTTCACCTCTATCAGTGGGATTGCTAGCGACTCCTCTATAGCCAAAGACCTTGGTGACAGGGCTATGTTCTTGGCCCACGTCACTCCCTTCTATCCTACGCATCTTGCTGATTTCCCCAAGAAGCTGGCGGATTTGCTTCGCTCTGCTGGAAGCACCCTGCTTTCTGGGCTCCGGTGTCACCTGACGCAGGCTCTCATCCTCCTCGTAAATAGACAGATTGTTGATATTAGGGAAACACTTCCATTGTTCATGGATCTCCAAACCCTTGGTGATAGAACGTTAAGAAAGTTGGCGTTTGATCATGTTGTTCATAGCATTAGGCGCATGAATCAAAAACATAAAAATGAAGCGAAGAACCGAGCACTTCAAAATGTCTTATTTGGGATGCTACAGCAAGAAGATGTAGCAAAGGCTAAGCAATCACTGATCACACTGTGTGAACTTCACCGGAGGAAAATATGGTTTGATGATAGAACTGCAAATGCCATCTGTACAGCTTCCTTTCATCCATCGCCAAGGATCATGATAGCAGCTTTGTCATTTCTTTTGGATTATGAGAAGATTGAAAACGATGAAGTCAGTGATGATTCGAGCAGTGAAGATGAATCATCTGCACAATCTCAAGTTCTCCTTAATAAGGAGGCAATTTACAAGGCACACCACAAAGGTACAGTAGCTAGCAAGAAAAAGAAGCAAGCTAAACTGCAACGTGCCATGCGTAGCTTGAAAAGACAGCAACGCATGTCCTCTGGAGACAAGAACACCAGTTATTATTCACCACTTAATCACCTGAAAGATGCACAGGGTTTTGCTGAGAAGTTGTTCTCTCGCCTTCAAAACTGTAATGAACGATTTGAGGTTAGGATGATGATGTTGAAAGTGATTACTCGAACAGTTGGACTCCACCGATTGATTTTACTAAATTTATATCCCTTTCTTCAGAAATATGTTCAGCCACATCAACGAGATGTCACGAATTTGCTTGCAGCAGCAGTACAGGCTTGCCATGATATGGTTCCTCCTGATGCAGTCGAGCCCTTGTTTAAACAGATAGTAAATCAATTTGTACATGACCGCTCACGTCCAGAGGCTATTACTGTTGGATTAAATGTGGTGAGGGAGCTATGCATGCGCATGCCCTTGCTTATGACAGAGGAGTTGCTACAAGATCTTGCATTATATAAGAAGTCACATGATAAGTCAGTTTCAATTGCTTCCCGATCTCTGATTGCCTTATTCAGAGAGGTTTGTCCTTCGCTACTAATTAAGAAGGACCGTGGGCGGCCTATTGATCCTAAGGCTAGACCAAAAGCCTATGGTGAAGTTAGTGTTGCAACTGATATTCCTGGTCTTGAGTTGCTACAGACTCTTGACAGTGACAATGAGCAGGAGGGTGATGATTCAGATGACTCTATACATAGTGGCTCTGACAATGATCAGGAAAATGCCAATGGTAATGAAGAGAACGAGGTGATTGGTGATGATGTTGGAAGTGAGGATGATGATGCTGATGGTAGTGATGTTGGATCAGAAGATGTAGAAAGTGATACTGAAGATGAGGAGGACAATCTTGAAGAGAATGAACAGGTTGATGAAGAGGATGGTGAGGGTATGGAACATGATGATAGTGATCTAAATACATCTAGTGATGCTGATCTACGTGCATCTAGTGATGATGATTCTCATGCATCTGGTGATGATGAGACCATTGATAGAAAGAGTAAAAGTAATCAACCCTCAGTTAGAAAAAGGAAGCTTACTGATTCTGGTGAACAACTTAATGTTGGTGATGCAAGTCTTCGAGCTCTTAAGAAATTAGCCAAAACAGATGGAATACTTTCTAATGAGGACTTCCAAAGGATCAAGGAGCTAAGGGCAAAGAAGGAAGCTAAAAATGCATTGGCTCAGCATGGGTTAGCAAAGTCTGCAGCAGTTAAAGCTGCAAGCTTTGATCAACTTAGTATGAAACCTGTGGATGCTGCCAAGCTTGAAGTTCACATGAGGAAAAAAATGAGCAAGGATGAAAGATTGGCATTGATTAGAGCAGGGAGGGAGGATAGAGGAAAATACATGGCTCGAGCAGCTGTCAAACAGAAAAAGACGGGTGGCCTGAGCAACCGGCAGAAAGAGCATAAGAAGAAGATGCCGCTGGCTGCGAAGAGAGATAAGGCAGCGAAATCTCGTATCGAGAAAAAGAGAAAACAGAGTCGGGCTGGCAAACAGTTCCGAGGGAGGAAAGCCTGGAAACAGTAG 2448 0.4391 MSRHAISGVTPESLSASGRSSEKLSLPSLQSKMKCDPEGYESELVLLYNQFNSSLELFQQQAAMNFTSISGIASDSSIAKDLGDRAMFLAHVTPFYPTHLADFPKKLADLLRSAGSTLLSGLRCHLTQALILLVNRQIVDIRETLPLFMDLQTLGDRTLRKLAFDHVVHSIRRMNQKHKNEAKNRALQNVLFGMLQQEDVAKAKQSLITLCELHRRKIWFDDRTANAICTASFHPSPRIMIAALSFLLDYEKIENDEVSDDSSSEDESSAQSQVLLNKEAIYKAHHKGTVASKKKKQAKLQRAMRSLKRQQRMSSGDKNTSYYSPLNHLKDAQGFAEKLFSRLQNCNERFEVRMMMLKVITRTVGLHRLILLNLYPFLQKYVQPHQRDVTNLLAAAVQACHDMVPPDAVEPLFKQIVNQFVHDRSRPEAITVGLNVVRELCMRMPLLMTEELLQDLALYKKSHDKSVSIASRSLIALFREVCPSLLIKKDRGRPIDPKARPKAYGEVSVATDIPGLELLQTLDSDNEQEGDDSDDSIHSGSDNDQENANGNEENEVIGDDVGSEDDDADGSDVGSEDVESDTEDEEDNLEENEQVDEEDGEGMEHDDSDLNTSSDADLRASSDDDSHASGDDETIDRKSKSNQPSVRKRKLTDSGEQLNVGDASLRALKKLAKTDGILSNEDFQRIKELRAKKEAKNALAQHGLAKSAAVKAASFDQLSMKPVDAAKLEVHMRKKMSKDERLALIRAGREDRGKYMARAAVKQKKTGGLSNRQKEHKKKMPLAAKRDKAAKSRIEKKRKQSRAGKQFRGRKAWKQ 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1296 815 Pfam SDA1 448 811 IPR007949 -
Lele24g1296 815 MobiDBLite consensus disorder prediction 525 658 - -
Lele24g1296 815 MobiDBLite consensus disorder prediction 1 28 - -
Lele24g1296 815 MobiDBLite consensus disorder prediction 760 815 - -
Lele24g1296 815 MobiDBLite consensus disorder prediction 1 32 - -
Lele24g1296 815 MobiDBLite consensus disorder prediction 557 605 - -
Lele24g1296 815 Coils Coil 290 313 - -
Lele24g1296 815 MobiDBLite consensus disorder prediction 606 655 - -
Lele24g1296 815 SUPERFAMILY ARM repeat 87 503 IPR016024 -
Lele24g1296 815 Pfam NUC130/3NT domain 88 139 IPR012977 -
Lele24g1296 815 MobiDBLite consensus disorder prediction 791 815 - -
Lele24g1296 815 PANTHER HSDA/SDA1-RELATED 21 811 IPR027312 GO:0000055|GO:0042273
Lele24g1296 815 MobiDBLite consensus disorder prediction 768 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1296 Lele-ChrLele24 18960362 18965977 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1296 24 18960362 18965977 Lele24g1296 24 18960362 18965977 ECH
Lele21g1342 21 21864449 21869931 Lele24g1296 24 18960362 18965977 hybridization
Lele22g1339 22 19173090 19178591 Lele24g1296 24 18960362 18965977 hybridization