Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1295 ATGAATCCTCTTTGCTGCATTGCTCCAGTTTCGATCGATCGGGACAGGGCCAACCCTGTCGTGCCTAAATCACCTGCACAGTGTCAGTTAGGAGTGGATTCATCTGTGAAAACTGTTAGCTATGGTTCGAAACCCAGCTTTTCTACTGTTGATTCGTCGGTTGGTACTGATTCTAACAAAGCGTCGTTTACTTCGAATCACGATGAGGAGGTGGTGGTGGTGGTCAGTGACGCTAGAGATTCCAAAGTGTTCAGTGGCACCGTAGCTGGGATTTTGTATAAGTGGGTGAATTATGGTAAGGGTTGGAGGTCCAGGTGGTTCATGCTTGAAGATGGGGTGCTTTCTTATTACAAGATTCATGGTCCTGATAAGATTTGGACGAGTCCGGCTAGAGATAGGAGTGTCAGGGTGATCGGTGAGGAGTCATCGAAATACATGAAGAAAGCAAATTGGAATCTAAATCGGCAGGGGGGCGCCACCAAGCAATGCAAACCCTTCGGTGAGATACATTTGAAGGTTTCTTCAGTTCGTGCCAGCAAGTCAGATGATAAGCGACTTTCCATATTTACTGGCACAAAAACTCTTCACTTGCGTTGTATATCTAGAGAAGAGAGAGCTATGTGGATTGAAGCTCTGCAGTCTGCAAAAGATCTTTTCCCTAGATCTCTAACAAGCAGTGATCTTGCTACCTCAGAAGACATTGTAGTTTCCACAGAAAAATTGCGATCTCGACTATCACAAGAAGGCATATCTGAAGCAATTATTAAAGACTCTGAATCAATTATGCTTTCTGAAGTCTCTTACCTTCAAGACCGCCTGAAATTTCTTCATCAAAAACATGTGATCTTGCTGGACACCTTAAAACAGCTAGAGACTGAGAAAATAGAGTTGGAAACTACTGTGGTTGATGAAACAAAGGAACGTGAGTCATATTGTGGACAGGGGAATAGAAGGTTTAGTGATTTCTATTCTGTTATGTCCGAAGGCAGTGCTTCCGACTCTGTAGCAGATAATGAAAGCCAGGATGGAGGGGATGTTGAAACAGAAGATGATGATGGAACATATTTTGACACAAACGACTTTCTGTCTTCAGATGCTTTAAGAAGTACATCCTACCGAAGTAGGGAAGGTGTGGGAAATTCTTGTATATATGACAGAGGTTCTTTCTTTTCTGATGGTTTGTACGGGCTTGAGAATGGAATTAAAGATGTAAAATATCCATATGTCAAAAGAAGGGATAATTTACCAGAACCAAAAGAGAAAGACAAGGCTGTTGGTTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGCCTGCCTGTTTATTTTAATGAACCACTGTCTTCATTACAAAAGTGCTTTGAAGACTTGGAGTATTCATACTTGGTTGATAGATCATCGGAGTGGGGAAAGCAGGGGAATGGTTTGATGAGAATCCTAAATATTGCGGCTTTTGCTGTGTCTGGGTATGCTTCAACAGAAGGTCGACAGTGCAAGCCTTTTAATCCTCTTCTTGGGGAGACTTATGAAGCTGACTATCCAGATAAAGGACTTAGGTTTTTCTCTGAAAAGGTTAGTCATCATCCAATGGTTGTTGCTTGTCACTGCGAGGGAAGAGGATGGAAATTCTGGGCAGATTCCAATTTGAAAGGCAAGTTTTGGGGACGCTCTATCCAGCTAGATCCTCTGGGTGTCCTCACTCTTCAGTTTGAAGATGGTGAAACATTTCAATGGAGCAAGGTCACCACTTCAATATACAATATCATACTAGGAAAAATTTATTGCGATCACTATGGGACCATGCGCATCAAAGGCAGTGGCAACTACTCCTGCAAGCTCAAGTTCAAAGAGCAGTCTATAATTGACCGAAATCCACATCAGGTCCATGGGTTTGTACAAGACAATAGAACTGGAGAGAAGGTAGCAATGTTAATTGGGAAGTGGGATGGGGCAATGTACTATGTCCTCGGGGATCCAACTACAAAGCCTAAAGGATATGATCCAATGACAGAAGCTGTATTATTATGGGAAAGGGACACCTACATTACTAGGACAAGATACAACCTCTCTCCTTTTGCAATATCATTGAATGAAATAACACCTGGTTTATCGGAGAAGTTGCCTCCAACTGATTCAAGGCTGAGACCAGATCAGAGGCATCTAGAAAATGGAGAATACGAGTTGGCAAATGCTGAGAAACTAAGACTTGAACAATTACAGAGACAGGCAAGAAGTATGCAGGAAAGAGGGTGGCAGCCTAGATGGTTCCGAAAAGACGAGGATGGTTCTTACAGATATGTTGGCGGCTATTGGGAAGCGAGAGAGAAAAGGAATTGGGATGGGATTCCTGATATATTTGGGCAGTCATGTGATTTGCCTTTCTGTTCTGAAGAGACTCTACCCTAA 2421 0.425 MNPLCCIAPVSIDRDRANPVVPKSPAQCQLGVDSSVKTVSYGSKPSFSTVDSSVGTDSNKASFTSNHDEEVVVVVSDARDSKVFSGTVAGILYKWVNYGKGWRSRWFMLEDGVLSYYKIHGPDKIWTSPARDRSVRVIGEESSKYMKKANWNLNRQGGATKQCKPFGEIHLKVSSVRASKSDDKRLSIFTGTKTLHLRCISREERAMWIEALQSAKDLFPRSLTSSDLATSEDIVVSTEKLRSRLSQEGISEAIIKDSESIMLSEVSYLQDRLKFLHQKHVILLDTLKQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSVMSEGSASDSVADNESQDGGDVETEDDDGTYFDTNDFLSSDALRSTSYRSREGVGNSCIYDRGSFFSDGLYGLENGIKDVKYPYVKRRDNLPEPKEKDKAVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRSSEWGKQGNGLMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMVVACHCEGRGWKFWADSNLKGKFWGRSIQLDPLGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDGAMYYVLGDPTTKPKGYDPMTEAVLLWERDTYITRTRYNLSPFAISLNEITPGLSEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARSMQERGWQPRWFRKDEDGSYRYVGGYWEAREKRNWDGIPDIFGQSCDLPFCSEETLP 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1295 806 Coils Coil 734 754 - -
Lele24g1295 806 Pfam Pleckstrin homology domain 90 214 - -
Lele24g1295 806 ProSiteProfiles PH domain profile. 85 217 IPR001849 -
Lele24g1295 806 Coils Coil 287 307 - -
Lele24g1295 806 Gene3D - 723 785 - -
Lele24g1295 806 Pfam Oxysterol-binding protein 427 780 IPR000648 GO:0008289
Lele24g1295 806 FunFam Oxysterol-binding protein-related protein 2A 723 793 - -
Lele24g1295 806 Gene3D - 85 219 IPR011993 -
Lele24g1295 806 SUPERFAMILY PH domain-like 88 222 - -
Lele24g1295 806 SMART PH_update 86 219 IPR001849 -
Lele24g1295 806 CDD PH_ORP_plant 88 221 - -
Lele24g1295 806 Gene3D - 512 678 - -
Lele24g1295 806 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 87 779 IPR000648 GO:0008289
Lele24g1295 806 MobiDBLite consensus disorder prediction 330 352 - -
Lele24g1295 806 SUPERFAMILY Oxysterol-binding protein-like 423 796 IPR037239 -
Lele24g1295 806 FunFam oxysterol-binding protein-related protein 1D isoform X1 512 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1295 Lele-ChrLele24 18953003 18958783 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1295 24 18953003 18958783 Lele24g1295 24 18953003 18958783 ECH
Lele21g1341 21 21856146 21862087 Lele24g1295 24 18953003 18958783 hybridization
Lele22g1338 22 19165502 19171626 Lele24g1295 24 18953003 18958783 hybridization