Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1294 ATGGACCCCGCTGCCTCTCGTCCAGCTGTAGTCATAGATAATGGCACCGGGTATACTAAGATGGGGTTCGCCGGTAACGTTGAACCTTGCTTTATTGCACCAACAGTAGTCGCTGTTAACGAGTCTTTCCTTAATCCATCTAGAAGTTCTTCTAAGGCCAATTGGCTTGCGCAGCACAATGCGGGAGTCATGGCTGATCTCGATTTCTTCATTGGGGACGAGGCACTCTCCAAGTCTCGATCTAGTAATACTTACAATCTTAGTTACCCTATTCAGCACGGCCAGGTTGAAAATTGGGACGCCATGGAGCGATTCTGGCAGCAGTGCATTTTTAATTATTTGAGGTGTGATCCGGAGGATCATTATTTTCTCTTGACCGAGAGTCCGTTGACAGCACCTGAGAGTCGCGAGTATACTGGTGAAATCATGTTCGAGACATTTAATGTACCTGGACTTTACATAGCTGTAAATTCCGTGCTTGCTCTTGCCGCCGGCTACACAGCATCCAAGTGTGAGATGACAGGAGTTGTTGTAGATGTTGGAGATGGAGCTACGCGTATTGTTCCTGTAGCAGATGGTTATGTTATTGGGAGTAGTATCAAATCAGTGCCTATTGCAGGAAAAGATGTTACTCTTTTTGTCCAGCAGCTCATGCGGGAAAGAGGAGAGAATGTACCGCCTGAAGACTCTTTTGAAGTTGCTCGCAAAGTGAAGGAAATGTATTGCTATACCTGTGCTGACATTGTTAAGGAGTTTAATAAGCATGACAGAGAACCAGCCAGGTATATCAAGCAATGGAGGGGTATCAAACCAAAAACGGGGGCGCCATATTCCTGTGATATTGGCTACGAACGATTTCTGGGTCCTGAGATTTTCTTTAATCCTGAGATATATAGCAGCGATTTTACCACCCCTCTGCCAGTTGTAATTGACAAGTGCATTCAGTCGGCACCAATTGACACAAGAAGAGCATTATATAAGAATATAGTTTTGTCTGGAGGATCAACTATGTTCAAGGATTTCCACAGGAGGTTACAACGTGATCTGAAGAAAATTGTGGATGCTCGTGTTCTTGCATCTGAAGCACGTCTTGGTGGTGAGGTAAAAGCGCAACCAGTGGAGGTCAATGTTCTCAGCAATCCCATCCAGAGGGTTGCAGTTTGGTTTGGAGGCTCAGTGCTTGCTTCAACACCGGAGTTTTTTGGGGCTTGCCATACAAAGGCAGAGTATGAGGAATTTGGAGCAAGCATATGCCGGACAAATCCAGTTTTCAAGGGGATGTACTGA 1287 0.4545 MDPAASRPAVVIDNGTGYTKMGFAGNVEPCFIAPTVVAVNESFLNPSRSSSKANWLAQHNAGVMADLDFFIGDEALSKSRSSNTYNLSYPIQHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTASKCEMTGVVVDVGDGATRIVPVADGYVIGSSIKSVPIAGKDVTLFVQQLMRERGENVPPEDSFEVARKVKEMYCYTCADIVKEFNKHDREPARYIKQWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYSSDFTTPLPVVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASEARLGGEVKAQPVEVNVLSNPIQRVAVWFGGSVLASTPEFFGACHTKAEYEEFGASICRTNPVFKGMY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1294 428 CDD NBD_sugar-kinase_HSP70_actin 94 206 - -
Lele24g1294 428 Pfam Actin 7 419 IPR004000 -
Lele24g1294 428 SMART actin_3 7 423 IPR004000 -
Lele24g1294 428 Gene3D - 10 414 - -
Lele24g1294 428 FunFam Actin-related protein 3 10 174 - -
Lele24g1294 428 FunFam Actin-related protein 3 (ARP3) 205 303 - -
Lele24g1294 428 Gene3D Actin; Chain A, domain 4 205 303 - -
Lele24g1294 428 Gene3D - 158 386 - -
Lele24g1294 428 PANTHER ACTIN 9 415 IPR004000 -
Lele24g1294 428 SUPERFAMILY Actin-like ATPase domain 173 423 IPR043129 -
Lele24g1294 428 SUPERFAMILY Actin-like ATPase domain 7 165 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1294 Lele-ChrLele24 18940194 18946375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1294 9 419 Miscellaneous Gene Families AT2G42100 34.217 8.59e-72 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1294 24 18940194 18946375 Lele24g1294 24 18940194 18946375 ECH
Lele21g1340 21 21836654 21843887 Lele24g1294 24 18940194 18946375 hybridization
Lele22g1337 22 19146598 19153807 Lele24g1294 24 18940194 18946375 hybridization