Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1340 ATGGACCCCGCTGCCTCTCGTCCAGCTGTAGTCATAGACAATGGCACCGGGTATACTAAGATGGGGTTCGCCGGTAACGTTGAACCTTGCTTTATTGCACCGACAGTAGTCGCTGTTAACGAGTCTTTCATTAATCCATCTAGAAGTTCTTCTAAGGCCACTTGGCTTGCGCAGCACAATGCAGGAGTCATGGCTGATCTCGATTTCTTCATTGGGGACGAGGCACTCTCCAAGTCTCGATCTAGTAATACTTACAATCTTAGTTACCCTATTCAGCATGGCCAGGTTGAAAATTGGGACGCCATGGAGCGATTCTGGCAGCAGTGCATTTTTAATTATTTGAGGTGTGATCCGGAGGATCATTATTTTCTCTTGACTGAGAGTCCGTTGACAGCACCTGAGAGTCGCGAGTATACTGGTGAAATCATGTTCGAGACATTCAATGTACCTGGACTTTACATAGCTGTAAATTCCGTGCTTGCTCTTGCCGCCGGCTACACAGCATCCAAGTGTGAGATGACAGGAGTTGTTGTGGATGTTGGAGATGGAGCTACGCGTATTGTTCCTGTGGCAGATGGTTATGTTATTGGGAGTAGCATCAAATCAGTTCCTATTGCAGGAAAAGATGTTACTCTTTTTGTCCAGCAGCTCATGCGGGAAAGAGGAGAGAATGTACCACCTGAAGACTCTTTTGATGTTGCTCGCAAAGTGAAGGAAATGTATTGCTATACTTGTGCTGACATTGTTAAGGAGTTTAATAAGCATGACAGAGAACCAGCTAGGTATATCAAGCAATGGAGGGGTATCAAACCAAAAACGGGGGCACCATATTCCTGTGATATTGGCTATGAACGATTTCTGGGTCCTGAGATTTTCTTTAATCCTGAGATATATAGCATTGATTTTACCACCCCTCTGCCAGTTGTAATTGACAAGTGCATTCAGTCTGCACCAATTGACACAAGAAGAGCGTTATATAAGAATATAGTTTTGTCTGGAGGATCAACTATGTTCAAGGATTTCCACAGGAGGTTACAACGTGATGTGAAGAAAATTGTGGATGCTCGTGTTCTTGCATCTGAAGCACGTCTTGGTGGTGAGATAAAAGCGCAACCAGTGGAGGTCAATGTTCTGAGCAATCCCATCCAGAGGGTTGCAGTTTGGTTTGGAGGCTCAGTGCTTGCTTCAACACCTGAGTTTTTTGGGGCTTGCCATACAAAGGCAGAGTATGAGGAATATGGAGCAAGCATATGCCGGACAAATCCAGTTTTCAAGGGGATGTACTGA 1287 0.4491 MDPAASRPAVVIDNGTGYTKMGFAGNVEPCFIAPTVVAVNESFINPSRSSSKATWLAQHNAGVMADLDFFIGDEALSKSRSSNTYNLSYPIQHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTASKCEMTGVVVDVGDGATRIVPVADGYVIGSSIKSVPIAGKDVTLFVQQLMRERGENVPPEDSFDVARKVKEMYCYTCADIVKEFNKHDREPARYIKQWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYSIDFTTPLPVVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDVKKIVDARVLASEARLGGEIKAQPVEVNVLSNPIQRVAVWFGGSVLASTPEFFGACHTKAEYEEYGASICRTNPVFKGMY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1340 428 CDD NBD_sugar-kinase_HSP70_actin 94 206 - -
Lele21g1340 428 PANTHER ACTIN 9 415 IPR004000 -
Lele21g1340 428 Gene3D Actin; Chain A, domain 4 205 303 - -
Lele21g1340 428 SUPERFAMILY Actin-like ATPase domain 7 165 IPR043129 -
Lele21g1340 428 FunFam Actin-related protein 3 (ARP3) 205 303 - -
Lele21g1340 428 Gene3D - 158 386 - -
Lele21g1340 428 Gene3D - 10 414 - -
Lele21g1340 428 SMART actin_3 7 423 IPR004000 -
Lele21g1340 428 Pfam Actin 7 419 IPR004000 -
Lele21g1340 428 SUPERFAMILY Actin-like ATPase domain 173 423 IPR043129 -
Lele21g1340 428 FunFam Putative actin-related protein 5 387 415 - -
Lele21g1340 428 FunFam Actin-related protein 3 10 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1340 Lele-ChrLele21 21836654 21843887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1340 9 419 Miscellaneous Gene Families AT2G42100 33.981 2.65e-72 230
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1340 21 21836654 21843887 Lele21g1340 21 21836654 21843887 ECH
Lele21g1340 21 21836654 21843887 Lele23g0685 23 5310689 5316795 hybridization
Lele21g1340 21 21836654 21843887 Lele24g1294 24 18940194 18946375 hybridization