Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1286 ATGCAGTGCTGTATCATAGCGAGGCTGAAAACCCAACCTTTATGGTTTGGTGTGCTCTTCGTTTTGGGTTTATTCACCTTTCTGAGAATTTTCCTAGCTTTTCTCAGAGGGGTTTATGTCAATTTTCTCAGAGCCCCCAAAAATCTCAAGAAATACGGATCTTGGGCGCTCATTACTGGACCCACAGACGGTATTGGCAAGGGCTATGCATTTCAATTGGCTCGTGCAGGGCTTAATCTGGTTTTGGTCGGTCGGAATCCGGATAAGCTGAAGGATGTTTCCGATTCGATTCTAGCTAAGTACGGGAAAACCCAGATTAAGACGGTGGTTGTTGATTTTTCCGGTGATCTTTCTGAGGGTATGGTCAAGATTCGTGAAGCTATTGAAGGGTTAGATGTTGGGGTGTTGATTAATAACGTGGGAATCTCTTATCCTTACGCGAGATACTTCCATGAAGTGGATGAGGAACTTCTGAAGAACTTGATTAAAGTGAATGTAGAAGGAACTACCAAGGTTACACATACTGTTCTTCCTGGTATGGTTGAGAGAAAGAGAGGAGCAATCGTTAATATTGGTTCTGGAGCAGCAATTGTGATTCCTTCAGATCCTCTTTATGCTGTGTATGCTGCAACAAAAGCGTACATAGATCAGTTCTCAAGGTGTCTATATGTTGAATACAAGAAAAGTGGGATTGATGTCCAGTGTCAGGATTTGGTGGGTGATCGGTACGAGCCTCGCTGCACACCTTATTGTCCACATTCCATTCTGTGGGCATTGGCTCACTCGTTGCCGGAGTCTCTGGTTGACACTTGGCGTCTCGGGTTCTGCCAAGGCATTCGAAAGAGGGGGCAACTCAAGGATTCAAGGAAGAAGGAATAA 879 0.4471 MQCCIIARLKTQPLWFGVLFVLGLFTFLRIFLAFLRGVYVNFLRAPKNLKKYGSWALITGPTDGIGKGYAFQLARAGLNLVLVGRNPDKLKDVSDSILAKYGKTQIKTVVVDFSGDLSEGMVKIREAIEGLDVGVLINNVGISYPYARYFHEVDEELLKNLIKVNVEGTTKVTHTVLPGMVERKRGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQDLVGDRYEPRCTPYCPHSILWALAHSLPESLVDTWRLGFCQGIRKRGQLKDSRKKE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1286 292 Pfam short chain dehydrogenase 55 235 IPR002347 -
Lele24g1286 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Lele24g1286 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Lele24g1286 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Lele24g1286 292 Gene3D - 49 239 - -
Lele24g1286 292 PANTHER RH59310P 14 236 - -
Lele24g1286 292 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 235 IPR036291 -
Lele24g1286 292 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 49 240 - -
Lele24g1286 292 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Lele24g1286 292 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Lele24g1286 292 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Lele24g1286 292 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Lele24g1286 292 CDD 17beta-HSD1_like_SDR_c 53 267 - -
Lele24g1286 292 PIRSF 11-beta-HSD1 6 239 - -
Lele24g1286 292 PIRSF 11-beta-HSD1 236 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1286 Lele-ChrLele24 18841763 18843861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1286 1 292 Lipid Metabolism Gene Families AT1G67730 57.143 2.30e-134 381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1286 24 18841763 18843861 Lele24g1286 24 18841763 18843861 ECH
Lele21g1332 21 21748124 21755523 Lele24g1286 24 18841763 18843861 hybridization
Lele22g1327 22 18997600 18998081 Lele24g1286 24 18841763 18843861 hybridization