Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0656 ATGAAGATCAACGTTAACTCCGTCGCTCGCAAAGTCGAGGTTGACAATCGCATACCCCTCTATTATTATTACCGAATTGCCGATAATCTTCTCAAACAGGCCAATATCTATCGGGAGGAGAACAATATAGTCGACTTGTATGTCATACTTCTCAGATTTTCAAGTTTGGTTTCTGAAACTATACCATTTCATCGAGATTACCAAGCTTCACTTCCCAAAGAAAAAGCAGCATGTAAGAAGAGATTGCTAGCTGTATTGGATGAGCTTGAATCTTTGAAGCCAGAATTCAAACAAAAGGTTAATGAATTGAACGAGTTACATGGGAATGCTCTATTTCCTAAAGTTAATGACTCCAACAAGGCTTTGCACAGTTCATTGACTTCATCTTTGGAATGGCCTGCTGTCAATAATAATTCTTACTCAAGAATGGATTCTAAACAGCTGCAGCCTTCTGGGTTGGGTCTGCAGTCTTCATGGAAATATAATAATAATGCTGGTCATTACGTATCTTCAAATGCTGTGCCTATGGACAAGCAGTTTCAGAAACTATCTCTTAGTATACCTCTTCCAAAGGAGGAGACTCTATCCAGACACTCATTTTTGGGACCAAATGGTCTTCGGGGCCAGTGGCTTGGACCAAGTGCAGGACTGAAGGTTCACTATCCAAGCAGTAGTGATTTGACTAGTGCTGAGAATTCAAGTCCGAATCAGGATGGAAAATATGATCTTGTGGCAGTTAAAGAGGGTGATCCAGGAACAGGCATGTCCGCAATGGATTCAGTGCTCTCCTTGGATGATGGAAGTTGGTCACGTCCTGCTGATGAGTCATTTCCTCCTCAAGTGAATGAATCAGGGGACAGTCACTTCCAGTTGCTCAACATTAAGCAACCTTCACCTCCTCCAGTTCTTGCTCAGGTTCAGCCAGAATATGCCCCAATTCCTCCTTCAAGAGTTGCAGATCCAAGACCAGGACCAGCTAAGTCTTCTCCGGATTCTCCACTTGGTCCTGCTGGATATCAGCACCTACATATTTCTGTAAAAATGATGGATGATTTTTTGAGATTGGCTCAGGAAAATACACGGAAAAACCTAGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAACAGGGTTTTCCATATTACTACACTCATAATCCCAAAGCAGGAATCAACTCCTGACACGTGCCAAACATTAAATGAGGAAGAGATATTTGAAGTTCAAGACCGTTTATCACTTTTTCCTTTAGGCTGGATACATACACACCCATCACAGACTTGTTTCATGTCATCAGTAGATCTCCATACACATTACTCATACCAGATCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGATACAAAAAGTCCACATGGTATATTTCATCTGTCTGATCCTGGCGGTGTGTCAGTAATTCGCAACTGTCAGCAACGTGGATTCCATCCTCATGAGGAGCCTTCTGATGGAAGCCCAATTTATGAGCATTGTTCTCATGTCTATATGAACGGTAACCTGAAATTTGATGTTGTTGACCTTCGATAG 1551 0.4223 MKINVNSVARKVEVDNRIPLYYYYRIADNLLKQANIYREENNIVDLYVILLRFSSLVSETIPFHRDYQASLPKEKAACKKRLLAVLDELESLKPEFKQKVNELNELHGNALFPKVNDSNKALHSSLTSSLEWPAVNNNSYSRMDSKQLQPSGLGLQSSWKYNNNAGHYVSSNAVPMDKQFQKLSLSIPLPKEETLSRHSFLGPNGLRGQWLGPSAGLKVHYPSSSDLTSAENSSPNQDGKYDLVAVKEGDPGTGMSAMDSVLSLDDGSWSRPADESFPPQVNESGDSHFQLLNIKQPSPPPVLAQVQPEYAPIPPSRVADPRPGPAKSSPDSPLGPAGYQHLHISVKMMDDFLRLAQENTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTPDTCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNGNLKFDVVDLR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0656 516 ProSiteProfiles MPN domain profile. 342 472 IPR037518 -
Lele24g0656 516 Pfam USP8 dimerisation domain 7 99 IPR015063 -
Lele24g0656 516 CDD MPN_AMSH_like 339 516 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lele24g0656 516 Coils Coil 86 106 - -
Lele24g0656 516 MobiDBLite consensus disorder prediction 222 239 - -
Lele24g0656 516 Gene3D Cytidine Deaminase, domain 2 331 516 - -
Lele24g0656 516 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 339 445 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele24g0656 516 MobiDBLite consensus disorder prediction 312 339 - -
Lele24g0656 516 SUPERFAMILY JAB1/MPN domain 341 472 - -
Lele24g0656 516 Gene3D - 3 121 - -
Lele24g0656 516 SMART pad1_6 341 469 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele24g0656 516 MobiDBLite consensus disorder prediction 222 285 - -
Lele24g0656 516 FunFam AMSH-like ubiquitin thioesterase 3 327 516 - -
Lele24g0656 516 FunFam AMSH-like ubiquitin thioesterase 3 1 114 - -
Lele24g0656 516 PANTHER AMSH-LIKE PROTEASE 3 516 - -
Lele24g0656 516 MobiDBLite consensus disorder prediction 312 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0656 Lele-ChrLele24 4377836 4384344 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0656 24 4377836 4384344 Lele24g0656 24 4377836 4384344 ECH
Lele21g0669 21 4423928 4430207 Lele24g0656 24 4377836 4384344 hybridization
Lele22g0659 22 4346901 4353403 Lele24g0656 24 4377836 4384344 hybridization