Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0669 ATGAAGATCAACGTAAACTCCGTCGCTCGCAAAGTGGAGGTTGACAATCGCATACCCCTCCATTATTATTACCGAATTGCCGATAATCTTCTCAAACAGGCTAATATCTACCGGGAGGAGAACAATATAGTTGACTTGTATGTCATACTTCTCAGATTTTCAAGTTTGGTTTCTGAAACTATACCATTTCATCGAGATTACCAGGGTTCACTTCCCCAAGAAAAAGCAGCGTATAAGAAGAGGTTGCTAGCTGTATTGGATGAACTTGAATCTTTGAAGCCAGAATTCAAAAAGGTTAATGAATTGAACGAGTTACGTGGGAATGCTCTATTTCCTAAAGTTAATGACTCCAACGAGGCTTTGCACAGTTCAGTGACTTCATCTTTGGAATGGCCTGCTGTCAATAATAATACTTACTCAAGAATGGATTCTAAACAGCCGCAGCCTGCTAGGTTGGGTCTGCAGTCTTCATGGGAATATAATAATAATGCTGGTCATTACGTATCTTCAAATGCTGTGCCTATGGACAAGCAGTTTCAGAAACTATCTCTTAGTTTCCCTCTTCCAAAGGAGGAGACTCTATCCAGACACTCATTTTTGGGACCAAATGGTCTTCGGGGCCAGTGGCTTGGCCCAAGTGCAGGAATGAAGGTTCACTATCCAAGCAGTAGTGATTTGACTATTGCTGAGAATTCAAGTCTGAATCAGGATGGAAAATATGATCTTGTGGCAGTTAAAGAGGGTGATCCAGGAACAGGCATGTCCACAATGGATTCGGTGCTCTCCTTGGATGATGGAAGTTGGTCACGTCCTGCTGATGAGTCATGTCCTCCTCTTTTGAATGAATCAGGGGACAGTCACTTCCAGTTGCTCAACATTAAGCAACCTTCACCCCCTCCAGTTCTTGCTAAGGTTCAGCCAGAATATGCCCCAATTCCTCCTTCAAGAGTTGCAGATCCAAGACCAGGACCGGCTAAGTCTTCTCCGGATTCTCCAGTTGGTACTGCTGGATATCAACACCTACATATTCCTGTCAAAATGATGGATGATTTTTTGAGATTGGCTCAGGAAAATACACGGAAAAACCTAGAGACATGTGGCGTTCTTGCAGGGTCCTTGAGAAACAGGGTTTTCCATATTACTACACTCATAATCCCAAAGCAGGAATCAACTCCTGACACGTGCCAAACATTGAATGAGGAAGAGATATTTGACGTTCAAGACCGTTTATCTCTTTTTCCTTTAGGCTGGATACATACACACCCATCACAGACTTGTTTCATGTCATCAGTGGATCTCCATACACATTATTCATACCAGATCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGATACAAAAAGTCCACATGGTATATTTCATCTGTCTGATCCTGGCGGTGTGTCAGTAATTCGCAACTGTCAGCAACGTGGATTTCATCCCCATGAGGAGTCTTCCGATGGAAGCCCAATTTATGAACATTGCTCTCATGTCTATATGAACGGTAACCTGAAGTTTGATGTTGTTGACCTTCGATAG 1548 0.4296 MKINVNSVARKVEVDNRIPLHYYYRIADNLLKQANIYREENNIVDLYVILLRFSSLVSETIPFHRDYQGSLPQEKAAYKKRLLAVLDELESLKPEFKKVNELNELRGNALFPKVNDSNEALHSSVTSSLEWPAVNNNTYSRMDSKQPQPARLGLQSSWEYNNNAGHYVSSNAVPMDKQFQKLSLSFPLPKEETLSRHSFLGPNGLRGQWLGPSAGMKVHYPSSSDLTIAENSSLNQDGKYDLVAVKEGDPGTGMSTMDSVLSLDDGSWSRPADESCPPLLNESGDSHFQLLNIKQPSPPPVLAKVQPEYAPIPPSRVADPRPGPAKSSPDSPVGTAGYQHLHIPVKMMDDFLRLAQENTRKNLETCGVLAGSLRNRVFHITTLIIPKQESTPDTCQTLNEEEIFDVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEESSDGSPIYEHCSHVYMNGNLKFDVVDLR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0669 515 MobiDBLite consensus disorder prediction 249 275 - -
Lele21g0669 515 Gene3D - 3 109 - -
Lele21g0669 515 SUPERFAMILY JAB1/MPN domain 340 471 - -
Lele21g0669 515 Gene3D Cytidine Deaminase, domain 2 327 515 - -
Lele21g0669 515 PANTHER AMSH-LIKE PROTEASE 3 515 - -
Lele21g0669 515 ProSiteProfiles MPN domain profile. 341 471 IPR037518 -
Lele21g0669 515 FunFam AMSH-like ubiquitin thioesterase 3 326 515 - -
Lele21g0669 515 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 338 444 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele21g0669 515 MobiDBLite consensus disorder prediction 311 337 - -
Lele21g0669 515 SMART pad1_6 340 468 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele21g0669 515 Pfam USP8 dimerisation domain 7 96 IPR015063 -
Lele21g0669 515 FunFam AMSH-like ubiquitin thioesterase 3 1 113 - -
Lele21g0669 515 CDD MPN_AMSH_like 338 515 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0669 Lele-ChrLele21 4423928 4430207 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0669 21 4423928 4430207 Lele21g0669 21 4423928 4430207 ECH
Lele21g0669 21 4423928 4430207 Lele23g1369 23 18650033 18659734 hybridization
Lele21g0669 21 4423928 4430207 Lele24g0656 24 4377836 4384344 hybridization