Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0659 ATGAAGATCAACGTTAACTCCGTCGCTCGCAAAGTGGAGGTTGACAATCGCATACCTCTCTATTATTATTACCGTATTGCCGATAATCTTCTCAAACAGGCCAATATCTACAGGGAGGAGAACAATATAGTCGACTTGTATGTCATACTTCTCAGATTTTCAAGTTTGGTTTCTGAAACTATACCATTTCATCGAGATTACCAAGCTTCACTTCCCAAAGAAAAAGCAGCATATAAAAAGAGATTGCTAGCTGTATTGGATGAGCTTGAATCTTTGAAGCCAGAATTCAAACATAAGGTTAATGAATTGAACGAGTTACATGGGAATGCTCTATTTCCTAAAGTTAATGACTCCAACAAGGCTTTGCACAGTTCTGTGACTTCATCTTTGGAATGGCCTGCTGTCAATAATAATTCTTACTCAAGAATGGATTCTAAACAGCTGCAGCCTGCTGGGTTGGGTCTGCAGTCTTCATGGAAATATAATAATAATGCTGGTCATTACGTATCAAATGCTGTGCCTATGGACAAGCAGTTTCAGAAACTATCTCTTAGTATACCTCTTCCAAAGGAGGAGACTCTATCCAGACACTCATTTTTGGGACCAAATGGTCTTCGGGGCCAGTGGCTTGGACCAAGTGCAGGACTGAAGGTTCACTATCCAAGCAGTAGTGATTTGACTAGTGCTGAGAATTCAAGTCTGAATCAGGATGGAAAATATGATCTTGTGGCAGTTAAAGAGGGTGATCCAGGAACAGGCATGTCCACAATGGATTCAGTGCTCTCCTTGGATGATGGAAGTTGGTCACGTCCTGCTGATGAGTCATTTCCTCCTCAAGTGAATGAATCTGGGGACAGTCACTTCCAGTTGCTCAACATTAAGCAACCTTCACCTCCTCCAGTTCTTGCTCAGGTTCAGCCAGAATATGCCCCAATTCCTCCTTCAAGAGTTGCAGATCCAAGACCAGGACCGGCTAAGTCTTCTCCGGATTCTCCACTTGGTCCTGCTGGATATCAGCACCTACATATTCCAGTCAAAATGATGGATGATTTTTTGAGATTGGCTCAGGAAAATTCACGGAAAAACCTAGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAACAGGGTTTTCCATATTACTACACTCATAATCCCAAAGCAGGAATCAACTCCTGACACGTGCCAAACATTGAATGAGGAAGAGATATTTGAAGTTCAAGACCGTTTATCACTTTTTCCTTTAGGCTGGATACATACACACCCGTCACAGACTTGTTTCATGTCATCAGTAGATCTCCATACGCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGATACAAAAAGTCCACATGGTATATTTCATCTGTCTGATCCTGGTGGTGTGTCAGTAATTCGCAACTGTCAGCAACGTGGATTCCATCCCCATGAGGAGCCTTCTGATGGAAGCTCAATTTATGAGCATTGTTCTCATGTCTATATGAACGGTAACCTGAAGTTTGATGTTGTTGACCTTCGGTAG 1548 0.4251 MKINVNSVARKVEVDNRIPLYYYYRIADNLLKQANIYREENNIVDLYVILLRFSSLVSETIPFHRDYQASLPKEKAAYKKRLLAVLDELESLKPEFKHKVNELNELHGNALFPKVNDSNKALHSSVTSSLEWPAVNNNSYSRMDSKQLQPAGLGLQSSWKYNNNAGHYVSNAVPMDKQFQKLSLSIPLPKEETLSRHSFLGPNGLRGQWLGPSAGLKVHYPSSSDLTSAENSSLNQDGKYDLVAVKEGDPGTGMSTMDSVLSLDDGSWSRPADESFPPQVNESGDSHFQLLNIKQPSPPPVLAQVQPEYAPIPPSRVADPRPGPAKSSPDSPLGPAGYQHLHIPVKMMDDFLRLAQENSRKNLETCGVLAGSLKNRVFHITTLIIPKQESTPDTCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSSIYEHCSHVYMNGNLKFDVVDLR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0659 515 MobiDBLite consensus disorder prediction 311 338 - -
Lele22g0659 515 Gene3D Cytidine Deaminase, domain 2 330 515 - -
Lele22g0659 515 Pfam USP8 dimerisation domain 7 99 IPR015063 -
Lele22g0659 515 Coils Coil 86 106 - -
Lele22g0659 515 SMART pad1_6 340 468 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele22g0659 515 FunFam AMSH-like ubiquitin thioesterase 3 326 515 - -
Lele22g0659 515 ProSiteProfiles MPN domain profile. 341 471 IPR037518 -
Lele22g0659 515 FunFam AMSH-like ubiquitin thioesterase 3 1 114 - -
Lele22g0659 515 MobiDBLite consensus disorder prediction 311 329 - -
Lele22g0659 515 Gene3D - 3 121 - -
Lele22g0659 515 SUPERFAMILY JAB1/MPN domain 340 471 - -
Lele22g0659 515 CDD MPN_AMSH_like 338 515 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lele22g0659 515 MobiDBLite consensus disorder prediction 244 284 - -
Lele22g0659 515 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 338 444 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele22g0659 515 PANTHER AMSH-LIKE PROTEASE 3 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0659 Lele-ChrLele22 4346901 4353403 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0659 22 4346901 4353403 Lele22g0659 22 4346901 4353403 ECH
Lele22g0659 22 4346901 4353403 Lele23g1369 23 18650033 18659734 hybridization
Lele22g0659 22 4346901 4353403 Lele24g0656 24 4377836 4384344 hybridization