Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0616 ATGTGTCCTTCAGGCCGCTCCCTCTCTCCTGCCTCCACCGCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTGCAGCCGGATCCGCCGTCCACTCGTCTTTCCGACCAGCATTCGATGTCCTTGATTCTGACCGAGACGGCAAGATTAGCCGCGAAGATCTTCGGGCATTCTACGCCGGCAAAGCAGCGGCCGATGTCGACGACGACCTCATTGGCACGATGATGACGGTGGCAGACACCAACAAGGACGGTTTCGTGGAGTACGATGAGTTCGAGAGGGTGGTTCTTGGGGGCGGTGGAAAGAAGAACGGATCTGCGAGTTCGACCACGTCGTTCTTGGAGGAGATGTTTAAAGTGATGGACAAGGACGGAGACGGCCAGCTTAGCCACCGGGATTTGAAGAGCTTCATGGAAACGGCTGGCCTCGCCGTTACTGACGACGACATCGATGCTATGATCGTATTGGCCGGTGGCGATCGAAACGGCGGCGTCACATTCGAGGGCTTGCATAGAATATTAATGAACAATTGA 531 0.5612 MCPSGRSLSPASTASSSSSSSSSSAAGSAVHSSFRPAFDVLDSDRDGKISREDLRAFYAGKAAADVDDDLIGTMMTVADTNKDGFVEYDEFERVVLGGGGKKNGSASSTTSFLEEMFKVMDKDGDGQLSHRDLKSFMETAGLAVTDDDIDAMIVLAGGDRNGGVTFEGLHRILMNN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0616 176 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Lele24g0616 176 SMART efh_1 148 176 IPR002048 GO:0005509
Lele24g0616 176 SMART efh_1 112 140 IPR002048 GO:0005509
Lele24g0616 176 SMART efh_1 33 61 IPR002048 GO:0005509
Lele24g0616 176 SMART efh_1 70 98 IPR002048 GO:0005509
Lele24g0616 176 MobiDBLite consensus disorder prediction 1 30 - -
Lele24g0616 176 ProSiteProfiles EF-hand calcium-binding domain profile. 37 64 IPR002048 GO:0005509
Lele24g0616 176 CDD EFh 34 91 IPR002048 GO:0005509
Lele24g0616 176 CDD EFh 113 174 IPR002048 GO:0005509
Lele24g0616 176 Pfam EF-hand domain pair 35 94 IPR002048 GO:0005509
Lele24g0616 176 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Lele24g0616 176 PANTHER CALCIUM BINDING PROTEIN 113 169 - -
Lele24g0616 176 Pfam EF hand 113 139 IPR002048 GO:0005509
Lele24g0616 176 Gene3D - 99 176 - -
Lele24g0616 176 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Lele24g0616 176 SUPERFAMILY EF-hand 31 174 IPR011992 -
Lele24g0616 176 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Lele24g0616 176 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
Lele24g0616 176 FunFam Calcium-binding protein CP1 26 95 - -
Lele24g0616 176 Gene3D - 12 96 - -
Lele24g0616 176 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0616 Lele-ChrLele24 4119383 4119913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0616 1 173 EF-hand Containing Proteins AT5G49480 51.149 9.46e-55 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0616 24 4119383 4119913 Lele24g0616 24 4119383 4119913 ECH
Lele21g0618 21 4148217 4148744 Lele24g0616 24 4119383 4119913 hybridization
Lele22g0616 22 4082688 4083209 Lele24g0616 24 4119383 4119913 hybridization