Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0616 ATGTGTCCTTCCGGCCGCTCCCTCTCTCCTCCCTCCACCGCCTCTTCCTCCTCCTCCTCTTCTGCAACCGGATCCGCTGTCCACTCGTCTTTCCGACCAGCATTCGATGTCCTTGATTCTGACCGCGACGGCAAGATTAGCCGCGACGATCTTCGGGCATTCTACGCCGGCAGGCCAGCCGCCGACGTCGACGACGACCTCATTGGCACGATGATGATGGTGGCGGACACCAACAAGGACGGTTTCGTGGAGTACGATGAGTTCGAGAGGGTGGTTCTTGGGGGCGGTGGAAAGAAGAACGGATCTGCGAGTTCGGCCACGTCGTTCTTGGAGGAGATGTTTAAAGTAATGGACAAGGACGGAGACGGCCAGCTTAGCCACCGGGATTTGAAGAGCTTCATGGAAACGGCTGGCCTCGCCGTTACTGACGACGACATCGATGCGATGATCGTATTGGCCGGTGGCGATCGAAACGGCGGCGTCACATTCGAGGGCTTGCATAGAATATTAATGAACAGTTGA 522 0.5709 MCPSGRSLSPPSTASSSSSSSATGSAVHSSFRPAFDVLDSDRDGKISRDDLRAFYAGRPAADVDDDLIGTMMMVADTNKDGFVEYDEFERVVLGGGGKKNGSASSATSFLEEMFKVMDKDGDGQLSHRDLKSFMETAGLAVTDDDIDAMIVLAGGDRNGGVTFEGLHRILMNS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0616 173 CDD EFh 31 88 IPR002048 GO:0005509
Lele22g0616 173 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Lele22g0616 173 CDD EFh 110 171 IPR002048 GO:0005509
Lele22g0616 173 ProSitePatterns EF-hand calcium-binding domain. 39 51 IPR018247 -
Lele22g0616 173 MobiDBLite consensus disorder prediction 1 28 - -
Lele22g0616 173 Gene3D - 13 93 - -
Lele22g0616 173 PANTHER CALCIUM BINDING PROTEIN 110 166 - -
Lele22g0616 173 Gene3D - 95 173 - -
Lele22g0616 173 Pfam EF hand 110 136 IPR002048 GO:0005509
Lele22g0616 173 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Lele22g0616 173 ProSiteProfiles EF-hand calcium-binding domain profile. 34 61 IPR002048 GO:0005509
Lele22g0616 173 Pfam EF-hand domain pair 32 91 IPR002048 GO:0005509
Lele22g0616 173 SUPERFAMILY EF-hand 28 171 IPR011992 -
Lele22g0616 173 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Lele22g0616 173 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Lele22g0616 173 SMART efh_1 109 137 IPR002048 GO:0005509
Lele22g0616 173 SMART efh_1 30 58 IPR002048 GO:0005509
Lele22g0616 173 SMART efh_1 145 173 IPR002048 GO:0005509
Lele22g0616 173 SMART efh_1 67 95 IPR002048 GO:0005509
Lele22g0616 173 FunFam Calcium-binding protein CP1 24 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0616 Lele-ChrLele22 4082688 4083209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0616 1 170 EF-hand Containing Proteins AT5G49480 53.216 8.27e-56 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0616 22 4082688 4083209 Lele22g0616 22 4082688 4083209 ECH
Lele22g0616 22 4082688 4083209 Lele23g1422 23 18942876 18943397 hybridization
Lele22g0616 22 4082688 4083209 Lele24g0616 24 4119383 4119913 hybridization