Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0618 ATGTGTCCTTCCGGCAGCTCCCTCTCTCCTCCCTCCGCCGCCTCTTCCTCTTCCTCGTCCCCCCCTTCTGCAGCCGAATCCACCATCGACTCGTCTTTTCGACCAGCATTCGATGTCCTCGATTCTGACCGCGACGGCAAGATTAGCCGCGACGATCTTAGGGCATTCTACGCCGGCAGGGCTGCCGCCGACGTCGACGACGACCTGATTGGTACGATGATGACGGTGGCGGACACAAACAAGGATGGTTTCGTGGAGTACGATGAGTTTGAGAGGGTGGTTCTTGGCGGCAGTGGCAAGAAGAACGGATCTAAGAGTTCGGCGACGTCGTTCTTGGAGGAGATGTTCAAAGTGATGGACAAGGACGGAGACGGCCAGCTTAGCCACCGGGATTTGAAGAGCTTCATGGAAATGGCTGGCCTCGGCGTTACCGACGACGACATCGATGCAATGATCATATTGGCCGGTGGCGATCGAAACGGCGGCGTGACATTCGAAGGCTGGCACGGAATATTAATGAACAGTTGA 528 0.5644 MCPSGSSLSPPSAASSSSSSPPSAAESTIDSSFRPAFDVLDSDRDGKISRDDLRAFYAGRAAADVDDDLIGTMMTVADTNKDGFVEYDEFERVVLGGSGKKNGSKSSATSFLEEMFKVMDKDGDGQLSHRDLKSFMEMAGLGVTDDDIDAMIILAGGDRNGGVTFEGWHGILMNS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0618 175 ProSiteProfiles EF-hand calcium-binding domain profile. 107 142 IPR002048 GO:0005509
Lele21g0618 175 FunFam Calcium-binding protein CP1 26 94 - -
Lele21g0618 175 MobiDBLite consensus disorder prediction 1 30 - -
Lele21g0618 175 ProSitePatterns EF-hand calcium-binding domain. 41 53 IPR018247 -
Lele21g0618 175 Gene3D - 13 96 - -
Lele21g0618 175 SUPERFAMILY EF-hand 28 173 IPR011992 -
Lele21g0618 175 Gene3D - 97 174 - -
Lele21g0618 175 SMART efh_1 147 175 IPR002048 GO:0005509
Lele21g0618 175 SMART efh_1 32 60 IPR002048 GO:0005509
Lele21g0618 175 SMART efh_1 111 139 IPR002048 GO:0005509
Lele21g0618 175 SMART efh_1 69 97 IPR002048 GO:0005509
Lele21g0618 175 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Lele21g0618 175 PANTHER CALCIUM BINDING PROTEIN 31 93 - -
Lele21g0618 175 CDD EFh 33 90 IPR002048 GO:0005509
Lele21g0618 175 Pfam EF-hand domain pair 33 93 IPR002048 GO:0005509
Lele21g0618 175 CDD EFh 112 166 IPR002048 GO:0005509
Lele21g0618 175 ProSitePatterns EF-hand calcium-binding domain. 120 132 IPR018247 -
Lele21g0618 175 Pfam EF hand 112 138 IPR002048 GO:0005509
Lele21g0618 175 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Lele21g0618 175 MobiDBLite consensus disorder prediction 1 31 - -
Lele21g0618 175 ProSiteProfiles EF-hand calcium-binding domain profile. 36 63 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0618 Lele-ChrLele21 4148217 4148744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0618 1 172 EF-hand Containing Proteins AT5G49480 50.289 1.65e-50 158
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0618 21 4148217 4148744 Lele21g0618 21 4148217 4148744 ECH
Lele21g0618 21 4148217 4148744 Lele23g1422 23 18942876 18943397 hybridization
Lele21g0618 21 4148217 4148744 Lele24g0616 24 4119383 4119913 hybridization