Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0080 ATGCTTATGGTCCCTACCTACAAATTTGCTAATTTCACCTGCAACACCAAAAATAGCCTATCCCCCAAGGCTAAAACTGTAATTTTCTGTCCGAGGGCACTACTCCTTCATAAACGCCACATTCCTCCGCCGCTTCTCTCGTGCCTCCCTCTTTCCGCTTCCTCACCCTGCTCTCCCGACTCCACCTTCTCATTCTATAGTATATCCCCTTCTTCGGCCATGGACCCCGTTCCAGTCTGGGGAAACACGCCCCTCGCAACCGTAGACCCCGAAATCCATGACCTCATTGAGAAGGAGAAGCGCCGTCAATGCCGCGGCATCGAGCTCATTGCATCCGAAAATTTCACTTCTTTCGCCGTCATCGAGGCCCTCGGCAGTGCTCTCACCAACAAGTACTCCGAAGGCATGCCCGGTAACCGTTACTACGGTGGCAACGAGTACATCGACGAAATCGAGAATCTCTGCAGGTCTCGTGCTCTGCAGGCCTTCCACGTAGATCCCGCCAAGTGGGGTGTCAATGTTCAGCCCTACTCTGGTTCGCCGGCGAATTTCGCCGCCTACACGGCTGTCCTTCAGCCCCACGATCGCATCATGGGGTTGGATCTGCCCTCTGGCGGTCATTTGACGCACGGGTACTACACTGCCGGAGGGAAGAAGATCTCCGCAACCTCGATTTATTTCGAGAGCTTGCCTTACAAGGTGAATTCAACTACTGGATACCTTGACTATGACAAGCTGGAGGAGAAGGCCTTGGACTTCCGGCCCAAGTTGATCATTTGCGGGGGAAGTGCATACCCCCGGGACTGGGACTATGCGAGGTTAAGGGAGATCGCGGACAAGTGTGGTGCCCTCTTGCTCTGTGATATGGCTCACATCAGTGGTCTTGTTGCTGCCCAGGAAGCTAATAACCCTTTTGAGTACTGTGACCTGGTCACCACGACAACCCACAAGAGCTTGAGGGGTCCTAGGGCAGGTATGATCTTCTACCGGAAAGGACCAAAACCACCCAAGAAGGGCCAGCCTGAGGGTGCCGTTTATGACTTTGAAGACAAGATCAATTTTGCTGTATTCCCCTCCCTCCAGGGTGGTCCTCACAATCACCAGATTGGTGCTCTTGCTGTTGCCCTGAAACAAGCCATGTCACCTGGTTTCAAGGCCTATGCCAAACAAGTTAAGGCCAATGCAGTTGCTCTTGGTAATTTCTTGATGAGCAAGGGATACAAGCTTGTCACTGGAGGAACTGAGAATCATCTTGTGTTGTGGGATCTCAGACCTCTTGGTTTGACTGGCAACAAGGTGGAGAAACTTTGTGACCTCTGTAACATCACCGTGAACAAGAATGCTGTTTTTGGTGACAGTAGTGCTCTGGCTCCTGGAGGAGTACGCATTGGTGCCCCAGCTATGACTTCAAGAGGATTGGTTGAGAAGGACTTTGAACAGATTGGAGAGTTCCTTCACCGTGCAGTGACTCTGACACTGAAGATCCAGAGCGAGTATGGCAAACTTTTGAAGGATTTCAACAAGGGCTTGGTAGACAACAAGGATATCGAAGCCCTCAAGGCTGATGTGGAGAAGTTTGCGGCCTCATTTGACATGCCCGGCTTCCAAGTTTCTGAGATGAAGTACAAGGATTAG 1635 0.5156 MLMVPTYKFANFTCNTKNSLSPKAKTVIFCPRALLLHKRHIPPPLLSCLPLSASSPCSPDSTFSFYSISPSSAMDPVPVWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDEIENLCRSRALQAFHVDPAKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVNSTTGYLDYDKLEEKALDFRPKLIICGGSAYPRDWDYARLREIADKCGALLLCDMAHISGLVAAQEANNPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKAYAKQVKANAVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLKIQSEYGKLLKDFNKGLVDNKDIEALKADVEKFAASFDMPGFQVSEMKYKD 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0080 544 FunFam Serine hydroxymethyltransferase 114 389 - -
Lele24g0080 544 FunFam Serine hydroxymethyltransferase 378 533 - -
Lele24g0080 544 Gene3D - 114 389 IPR015421 GO:0003824
Lele24g0080 544 Hamap Serine hydroxymethyltransferase [glyA]. 84 534 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele24g0080 544 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 309 325 IPR019798 GO:0030170
Lele24g0080 544 Pfam Serine hydroxymethyltransferase 86 484 IPR039429 -
Lele24g0080 544 CDD SHMT 86 526 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele24g0080 544 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 82 537 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele24g0080 544 SUPERFAMILY PLP-dependent transferases 77 535 IPR015424 -
Lele24g0080 544 Gene3D Aspartate Aminotransferase, domain 1 89 533 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0080 Lele-ChrLele24 529759 532582 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0080 24 529759 532582 Lele24g0080 24 529759 532582 ECH
Lele21g0083 21 552609 555275 Lele24g0080 24 529759 532582 hybridization
Lele22g0087 22 510651 513265 Lele24g0080 24 529759 532582 hybridization