Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0087 ATGGATCCCGTTCCAGTCTGGGGAAACACGCCCCTCGCAACCGTTGACCCTGAAATCCATGACCTCATTGAGAAGGAGAAGCGCCGTCAATGCCGTGGCATCGAGCTCATTGCATCCGAAAATTTCACTTCTTTCGCCGTCATCGAGGCCCTCGGCAGTGCTCTCACCAACAAGTACTCCGAAGGCATGCCCGGTAACCGTTACTACGGTGGCAACGAGTACATCGACGAAATCGAGAATCTCTGCAGGTCTCGTGCTCTTCAGGCCTTCCACGTAGATCCCGCCAAGTGGGGTGTCAATGTTCAGCCCTACTCTGGTTCGCCGGCGAATTTCGCCGCCTACACGGCTGTCCTTCAGCCCCACGATCGCATCATGGGGTTGGATCTGCCCTCTGGCGGTCATTTGACGCACGGGTACTACACTGCCGGAGGGAAGAAGATCTCCGCAACCTCGATTTATTTCGAGAGCTTGCCTTACAAGGTGAATTCAACTACTGGATACCTTGACTATGACAAGCTGGAGGAGAAGGCCTTGGACTTCCGGCCCAAGTTGATCATTTGCGGTGGAAGTGCATACCCTCGGGACTGGGACTATGCGAGGTTAAGGGAGATCGCGGACAAATGTGGTGCACTCTTGCTCTGCGATATGGCTCACATCAGTGGTCTTGTTGCTGCCCAGGAAGCTAATAACCCTTTTGAGTACTGTGACCTGGTCACCACAACAACCCACAAGAGCTTGAGGGGTCCTAGGGCAGGTATGATCTTCTACCGGAAAGGACCAAAACCACCCAAGAAGGGCCAGCCTGAGGGTGCCGTTTATGACTTTGAAGACAAGATCAATTTTGCTGTCTTCCCCTCCCTCCAGGGTGGTCCTCACAATCACCAGATTGGTGCTCTTGCTGTTGCCCTGAAACAAGCCATGTCACCTGGGTTCAAGGCCTATGCCAAACAAGTTAAGGCCAATGCAGTTGCTCTTGGTAATTTCTTGATGAGCAAGGGATACAAGCTTGTCACTGGAGGAACTGAGAATCATCTTGTGTTGTGGGATCTCAGACCTCTTGGTTTGACTGGCAACAAGGTGGAGAAACTTTGTGACCTCTGTAACATCACCGTGAACAAGAATGCTGTTTTTGGTGACAGCAGTGCTCTGGCTCCTGGAGGAGTACGCATTGGTGCCCCAGCTATGACTTCAAGAGGATTGGTTGAGAAGGACTTTGAACAGATTGGAGAGTTCCTTCACCGTGCAGTGACTCTGACACTGAAGATCCAGAACGAGTATGGCAAACTTTTGAAGGACTTCAACAAGGGCTTGGTAGACAACAAGGATATCGAAGCCCTCAAGGCTGATGTGGAGAAGTTTGCGGCCTCATTTGACATGCCCGGCTTCCAAGTTTCTGATATGAAGTACAAGGATTAG 1416 0.5148 MDPVPVWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDEIENLCRSRALQAFHVDPAKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVNSTTGYLDYDKLEEKALDFRPKLIICGGSAYPRDWDYARLREIADKCGALLLCDMAHISGLVAAQEANNPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKAYAKQVKANAVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLKIQNEYGKLLKDFNKGLVDNKDIEALKADVEKFAASFDMPGFQVSDMKYKD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0087 471 FunFam Serine hydroxymethyltransferase 41 316 - -
Lele22g0087 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Lele22g0087 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele22g0087 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Lele22g0087 471 Gene3D - 41 316 IPR015421 GO:0003824
Lele22g0087 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Lele22g0087 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 9 464 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele22g0087 471 FunFam Serine hydroxymethyltransferase 305 460 - -
Lele22g0087 471 SUPERFAMILY PLP-dependent transferases 6 462 IPR015424 -
Lele22g0087 471 CDD SHMT 13 453 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele22g0087 471 PIRSF SHMT 2 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0087 Lele-ChrLele22 510651 513265 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0087 22 510651 513265 Lele22g0087 22 510651 513265 ECH
Lele22g0087 22 510651 513265 Lele23g1969 23 22600826 22603379 hybridization
Lele22g0087 22 510651 513265 Lele24g0080 24 529759 532582 hybridization