Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0083 ATGCCAGATCCCTCCGCCATATCCCTCGTGCCCCCCCTCTCTGATTTCCCTTCTCCTCCTTCTCATTCTATCTTCCCCTCGTCGGCCATGGATCCCGTTCCTGTCTGGGGAAACACGCCCCTCGCAACTGTTGACCCAGAAATCCATGACCTCATTGAGAAGGAGAAGCGCCGTCAATGCCGCGGCATCGAGCTCATTGCATCCGAAAATTTCACTTCTTTCGCCGTCATCGAGGCCCTCGGCAGTGCTCTCACCAACAAGTACTCCGAAGGCATGCCCGGTAACCGTTACTACGGTGGCAACGAGTACATCGACGAAATCGAGAATCTCTGCAGGTCTCGTGCTCTTCAGGCCTTCCACGTAGATCCCGCCAAGTGGGGTGTCAATGTTCAGCCCTATTCTGGTTCCCCGGCGAACTTCGCCGCCTACACGGCCGTCCTTCAGCCCCACGATCGCATCATGGGGTTGGATCTTCCCTCTGGCGGTCATTTGACCCACGGGTACTACACTGCCGGAGGGAAGAAGATCTCTGCAACCTCGATTTATTTCGAGAGCTTGCCTTTCAAGGTGAATTCAACTACTGGATACCTTGACTATGAAAAGCTGGAGGAGAAGGCCTTGGACTTCCGGCCCAAGTTGATCATTTGCGGTGGAAGTGCATACCCCCGGGACTGGGATTATGCGAGGTTCAGGGAGATCGCGGATAAGTGTGGTGCACTCTTGCTCTGTGATATGGCCCACATCAGTGGTCTTGTTGCTGCCCAGGAAGCGAACAACCCTTTTGAGTACTGTGACTTGGTCACGACAACAACCCACAAGAGCTTGAGGGGTCCAAGGGCAGGTATGATCTTCTACAGGAAAGGACCAAAACCGCCCAAGAAGGGCCAGCCCGAGGGTGCAGTTTATGACTTTGAAGATAAGATCAATTTTGCTGTCTTCCCCTCCCTCCAGGGTGGTCCTCACAATCACCAGATTGGTGCTCTTGCTGTTGCCCTGAAACAAGCCATGTTACCTGGTTTCAAGGCCTATGCCAAACAAGTTAAGGCGAATGCAGTTGCTCTTGGAAACTTCTTGATGAGCAAGGGATACAAGCTTGTCACTGGAGGAACTGAGAATCATCTTGTCTTGTGGGATCTCAGGCCTCTTGGTTTGACCGGAAACAAGGTGGAGAAACTTTGTGACCTCTGCAACATCACCGTGAACAAGAATGCTGTTTTTGGTGACAGCAGTGCTTTGGCTCCTGGAGGAGTACGCATTGGTGCCCCAGCCATGACTTCAAGAGGGTTGGTTGAGAAGGACTTTGAACAGATTGGAGAGTTCCTTCACCGTGCGGTGACTTTGACACTGAAGATCCAGACCGAGCGTGGCAAACTTTTGAAGGACTTCAACAAGGGCTTGGTAGACAACAAGGATATTGAAGCCCTCAAGGCCGATGTGGAGAAGTTTGCGGCCTCATTTGACATGCCCGGCTTCCTAGTTTCTGAGATGAAGTACAAGGATTAG 1503 0.5223 MPDPSAISLVPPLSDFPSPPSHSIFPSSAMDPVPVWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDEIENLCRSRALQAFHVDPAKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPFKVNSTTGYLDYEKLEEKALDFRPKLIICGGSAYPRDWDYARFREIADKCGALLLCDMAHISGLVAAQEANNPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMLPGFKAYAKQVKANAVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLKIQTERGKLLKDFNKGLVDNKDIEALKADVEKFAASFDMPGFLVSEMKYKD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0083 500 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 265 281 IPR019798 GO:0030170
Lele21g0083 500 FunFam Serine hydroxymethyltransferase 340 489 - -
Lele21g0083 500 PIRSF SHMT 24 495 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele21g0083 500 Gene3D Aspartate Aminotransferase, domain 1 45 489 IPR015422 GO:0003824
Lele21g0083 500 Pfam Serine hydroxymethyltransferase 42 440 IPR039429 -
Lele21g0083 500 Gene3D - 70 345 IPR015421 GO:0003824
Lele21g0083 500 FunFam Serine hydroxymethyltransferase 70 345 - -
Lele21g0083 500 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 38 492 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele21g0083 500 CDD SHMT 42 482 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele21g0083 500 SUPERFAMILY PLP-dependent transferases 32 492 IPR015424 -
Lele21g0083 500 Hamap Serine hydroxymethyltransferase [glyA]. 40 490 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0083 Lele-ChrLele21 552609 555275 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0083 21 552609 555275 Lele21g0083 21 552609 555275 ECH
Lele21g0083 21 552609 555275 Lele23g1969 23 22600826 22603379 hybridization
Lele21g0083 21 552609 555275 Lele24g0080 24 529759 532582 hybridization