Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0039 ATGCAAGAAGCGGAGTACTGTAGTCGATCAGACGTATATTCCTTGATGAGATTCCTTGCATATAATATGATTCAAGTGTCTTTGGGTGAGGAGAACATTGAATTACGTACAAGTGTGAGTGAAATGAATTTCTCAATTCGCTTGTCAGTTATGAGTATGCCATTTTCTCTAGATGCAAACGCTCCCATCATTGGAAGCCATGTTAGAGTGAGCAAATCAATTAGCAGAAGACTTGTTATAAGAGCAAAAGTGACCTTGGCTCCCAAACCAAGGGATGCCATTTTTCCCCAGCTATCTAAACAAGGAATTCCTCTTGCTGATCTGCACGTACAAGAAGTTGTAGACAGGCAGACTCAGCCGGATAACTTCATCTCCACCATTCCTCACAAAAAGCCCCAGTTCCGTACTGGTTTTTTAGAGGAAGCATATGAAAGTTGCAGAAAGATCTGTGAAGAATATGCCAAGACCTTCTATCTAGGAACTCTGCTAATGACAGAAGAAAGAAAGAAAGCTATTTGGGCGATTTATGTTTGGTGCAGGAGGACAGATGAATTGGTTGATGGTCCTAATGCGGTCTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGAGAGACTCCATGACATTTTCAACGGACGCCCTTATGACATGCTTGATGCTGCTTTGACCGACACTGTTTCTATGTTTCCCTTGGACATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGGATGGATACGAGGAAAACGCGATACAAGAATTTCGAAGAGCTGTATCTTTACTGCTACTATGTGGCGGGAACTGTTGGCCTAATGAGTGTTCCAGTGATGGGAATTGCAGCAGACTCTCTTCTCCCTGCTCAAACTGTATATAATGCAGCACTGTATTTGGGTATTGGGAATCAACTGACAAACATTCTCAGAGATGTGGGAGAAGATGCATCAAGAGGGAGAGTTTACCTTCCCCAAGATGAACTTGCCCAGTTTGGCTTAAGTGACAAGGATATTTTCTCAAGAACTGTCACTGAAGAATGGAAGGTGTTCATGAAACATCAGATAAGCAGGGCAAGATTCTACTTCAGCTTGGCAGAGGAAGGAGCTTCTCAGCTTGAGAAGGCCAGCCGTTGGCCGGTTTGGTCGTCGTTAATAATATACGGTAAGATCTTGGATGCAATCGAAGACAACGGATATGACAACTTGACAAGAAGAGCTTTCGTAGGGAGAGCTAAGAAGCTGATGATGTTGCCTGTAGCTTTCACCAGATCTCTTTCATTCTCTCCCAAGGAGCAATACACACTCTCGCCCTTCAACAACCACCTTCAATAA 1326 0.4336 MQEAEYCSRSDVYSLMRFLAYNMIQVSLGEENIELRTSVSEMNFSIRLSVMSMPFSLDANAPIIGSHVRVSKSISRRLVIRAKVTLAPKPRDAIFPQLSKQGIPLADLHVQEVVDRQTQPDNFISTIPHKKPQFRTGFLEEAYESCRKICEEYAKTFYLGTLLMTEERKKAIWAIYVWCRRTDELVDGPNAVYMSSAVLDRWEERLHDIFNGRPYDMLDAALTDTVSMFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAADSLLPAQTVYNAALYLGIGNQLTNILRDVGEDASRGRVYLPQDELAQFGLSDKDIFSRTVTEEWKVFMKHQISRARFYFSLAEEGASQLEKASRWPVWSSLIIYGKILDAIEDNGYDNLTRRAFVGRAKKLMMLPVAFTRSLSFSPKEQYTLSPFNNHLQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0039 441 SUPERFAMILY Terpenoid synthases 142 424 IPR008949 -
Lele24g0039 441 SFLD Phytoene synthase like 140 421 IPR044843 GO:0004311
Lele24g0039 441 ProSitePatterns Squalene and phytoene synthases signature 2. 297 322 IPR019845 GO:0016765
Lele24g0039 441 Gene3D Farnesyl Diphosphate Synthase 135 418 IPR008949 -
Lele24g0039 441 ProSitePatterns Squalene and phytoene synthases signature 1. 261 276 IPR019845 GO:0016765
Lele24g0039 441 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 72 423 - -
Lele24g0039 441 CDD Trans_IPPS_HH 144 411 IPR033904 GO:0004311
Lele24g0039 441 SFLD Squalene/Phytoene Synthase Like 140 421 IPR002060 GO:0009058
Lele24g0039 441 Pfam Squalene/phytoene synthase 153 408 IPR002060 GO:0009058
Lele24g0039 441 FunFam Phytoene synthase chloroplastic 134 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0039 Lele-ChrLele24 292079 294375 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0045 21 324203 326232 Lele24g0039 24 292079 294375 hybridization
Lele22g0043 22 271472 273422 Lele24g0039 24 292079 294375 hybridization