Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0043 ATGCCATTTTCTCTAGATGCAAACGCTTCCATCATTGGAAGCCATGTTAGAGTGAGCAAATCAATTAGCAGAAGACTTGGTGTTATAAGAGCACAAGTGACCTTGGCTCCCAAACCACCAAGGGATGCCATTTTTCCCCAGCTGTCTAAACAAGGAATTCCTCTTGCTGATCTGCACGTACAAGAAGTTGTAGACAGGCAGACTCAGCCGGATAACTTCATCTCCACCATTCCTCACAAAAAGCCCCAGTTTCGTACTGGTTTTTTAGAGGAAGCATATGAAAGTTGCAGAAAGATCTGTGAAGAATATGCCAAGACCTTCTATCTAGGAACTCTGCTAATGACAGAAGAAAGAAAGAAAGCCATATGGGCGATTTATGTTTGGTGCAGGAGGACAGATGAATTGGTTGATGGTCCTAATGCGGTCTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGAGAGACTCCATGACATTTTCAACGGACGCCCTTATGACATGCTTGACGCTGCTCTGACCGACACTGTTTCTATGTTTCCCTTGGACATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGGATGGATACGAGGAAAACGCGGTACAAGAATTTCGAAGAGCTGTATCTTTACTGCTACTATGTGGCGGGGACTGTTGGCCTAATGAGTGTTCCAGTGATGGGAATTGCAGCAGAGTCTATTCTCCCTGCTCAAACTGTATATAATGCAGCACTGTATTTGGGTATTGGGAATCAACTGACAAACATTCTCAGAGATGTGGGAGAAGATGCATCAAGAGGGAGAGTTTACCTTCCCCAAGATGAAATTGCCCAGTTTGGCTTAAGTGACAAGGATATTTTCTCAAGAACTGTTACTGAAGAATGGAAGGTGTTCATGAAACATCAGATAAGCAGGGCAAGATTCTACTTCAGCTTGGCAGAGGAAGGAGCTTCTCAGCTTGAGAAGGCCAGCCGTTGGCCGGTTTGGTCTTCGTTAATAATATACGGTAAGATCTTGGATGCAATCGAAGACAACGGATATGACAACTTGACAAGAAGAGCGTACGTAGGAAGAGCTAAGAAGCTGATGATGTTGCCTGTAGCTTTCACCAGATCTCTCTCGTTCTCTCCCAAGGAGCAATACACACTCTCGCCCTTCAACAACCACCTTCAATAA 1176 0.4447 MPFSLDANASIIGSHVRVSKSISRRLGVIRAQVTLAPKPPRDAIFPQLSKQGIPLADLHVQEVVDRQTQPDNFISTIPHKKPQFRTGFLEEAYESCRKICEEYAKTFYLGTLLMTEERKKAIWAIYVWCRRTDELVDGPNAVYMSSAVLDRWEERLHDIFNGRPYDMLDAALTDTVSMFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAAESILPAQTVYNAALYLGIGNQLTNILRDVGEDASRGRVYLPQDEIAQFGLSDKDIFSRTVTEEWKVFMKHQISRARFYFSLAEEGASQLEKASRWPVWSSLIIYGKILDAIEDNGYDNLTRRAYVGRAKKLMMLPVAFTRSLSFSPKEQYTLSPFNNHLQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0043 391 SUPERFAMILY Terpenoid synthases 92 374 IPR008949 -
Lele22g0043 391 FunFam Phytoene synthase chloroplastic 84 367 - -
Lele22g0043 391 ProSitePatterns Squalene and phytoene synthases signature 2. 247 272 IPR019845 GO:0016765
Lele22g0043 391 SFLD Phytoene synthase like 90 371 IPR044843 GO:0004311
Lele22g0043 391 CDD Trans_IPPS_HH 94 361 IPR033904 GO:0004311
Lele22g0043 391 Pfam Squalene/phytoene synthase 103 358 IPR002060 GO:0009058
Lele22g0043 391 Gene3D Farnesyl Diphosphate Synthase 85 368 IPR008949 -
Lele22g0043 391 SFLD Squalene/Phytoene Synthase Like 90 371 IPR002060 GO:0009058
Lele22g0043 391 ProSitePatterns Squalene and phytoene synthases signature 1. 211 226 IPR019845 GO:0016765
Lele22g0043 391 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 47 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0043 Lele-ChrLele22 271472 273422 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0043 22 271472 273422 Lele23g2011 23 22854881 22856910 hybridization
Lele22g0043 22 271472 273422 Lele24g0039 24 292079 294375 hybridization