Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g2011 ATGAGTATGACATTTTCTCTAGCAGCAAACGCTTCCATCATCGGAAGCCCTGTTCGTGTGAGCAAATCAATTAGCACAAGACCCGGTGTTATAAGAGCACAAGTGACCTTGGCTCCCAAACCAACAAGGGATGCCACTTATCCTCAGTTGTCAAAACAGGGAATTCCTCTCGCTGATCTGCACGTACAGGAAGTTGTAGAGAGGCAGACTCAGCCGGATAACTTCATCTCCACCACTCCTCACAAAAATCCTCAGTTCCGTCCTGGTTTTTTAGCGGAAGCATACGAATGTTCCAGAAAGATCTGTAAAGAATATGCCAAGACCTTCTATCTAGGAACTCTACTCATGACAGAAGAAAGACAGAAAGCCATATGGGCGATTTATGTTTGGTGCAGGAGGACAGATGAATTGGTTGATGGTCCAAATGCGATCTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGAGAGACTCCATGACATTTTCAACGGACGCCCTTATGACTTGCTTGATGCTGCTCTGACCGACACTGTTGCTATGTTTCCCTTGGACATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGGATGGATACAAGGAAAACCCGGTATAAGAATTTCGAAGAGCTATATCTTTACTGTTACTATGTGGCTGGAACTGTTGGCCTGATGAGTGTTCCAGTGATGGGAATTGCAGCAGAGTCTCTTCTCCCTGCTCAAACTATATATAACGCAGCACTATATTTGGGTATTGGGAATCAACTGACAAACATTCTCAGAGATGTGGGAGAGGATGCATCGAGAGGTAGAGTTTACCTTCCCCAAGATGAACTTGCCCAATTTGGCCTAAGCGACAAGGATATTTTCTCAAGAACTGTCACTGAAGAATGGAAGGTGTTCATGAAACATCAGATAAGCAGGGCAAGATTCTACTTCAGCTTGGCAGAGGAAGGAGCTTCTCAGCTTGAGAAGGCCAGCCGTTGGCCGGTTTGGTCGTCTTTAATAATATACGGTAAGATCTTGGATGCAATCGAAGACAACGGATATAACAACTTGACAAGAAGAGCCTACGTAGGAAGAGCTAAGAAGCTTATGATGTTGCCTCTAGCTTTCACCAGATCTCTCTCGTTCTCTCCCGAGGATCAGCACACACTGTCGTCCTTCAACAACCACCTTCAATAA 1182 0.4492 MSMTFSLAANASIIGSPVRVSKSISTRPGVIRAQVTLAPKPTRDATYPQLSKQGIPLADLHVQEVVERQTQPDNFISTTPHKNPQFRPGFLAEAYECSRKICKEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAIYMSSAVLDRWEERLHDIFNGRPYDLLDAALTDTVAMFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAAESLLPAQTIYNAALYLGIGNQLTNILRDVGEDASRGRVYLPQDELAQFGLSDKDIFSRTVTEEWKVFMKHQISRARFYFSLAEEGASQLEKASRWPVWSSLIIYGKILDAIEDNGYNNLTRRAYVGRAKKLMMLPLAFTRSLSFSPEDQHTLSSFNNHLQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g2011 393 Pfam Squalene/phytoene synthase 104 360 IPR002060 GO:0009058
Lele23g2011 393 SUPERFAMILY Terpenoid synthases 94 375 IPR008949 -
Lele23g2011 393 ProSitePatterns Squalene and phytoene synthases signature 1. 213 228 IPR019845 GO:0016765
Lele23g2011 393 Gene3D Farnesyl Diphosphate Synthase 89 369 IPR008949 -
Lele23g2011 393 FunFam Phytoene synthase chloroplastic 87 369 - -
Lele23g2011 393 SFLD Phytoene synthase like 92 374 IPR044843 GO:0004311
Lele23g2011 393 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 44 375 - -
Lele23g2011 393 CDD Trans_IPPS_HH 98 363 IPR033904 GO:0004311
Lele23g2011 393 ProSitePatterns Squalene and phytoene synthases signature 2. 249 274 IPR019845 GO:0016765
Lele23g2011 393 SFLD Isoprenoid Synthase Type I 92 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g2011 Lele-ChrLele23 22854881 22856910 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0045 21 324203 326232 Lele23g2011 23 22854881 22856910 hybridization
Lele22g0043 22 271472 273422 Lele23g2011 23 22854881 22856910 hybridization