Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1969 ATGGATCCCGTTTCAGTCTGGGGAAACACGCCCCTCGCAACTGTTGACCCAGAGATCCATGACCTCATTGAGAAGGAGAAGCGCCGTCAATGCCGCGGCATCGAGCTCATTGCTTCCGAAAATTTCACTTCTTTCGCCGTCATCGAGGCCCTCGGCAGTGCTCTCACCAACAAGTACTCCGAAGGCATGCCCGGTAACCGTTACTACGGCGGCAACGAGTACATCGACGAGATCGAGAATCTCTGCAGGTCTCGTGCTCTTCAGGCCTTCCACGTAGATCCCGCCAAGTGGGGTGTCAATGTTCAGCCCTACTCTGGTTCCCCGGCGAACTTCGCCGCCTACACGGCCGTCCTTCAGCCCCACGATCGCATCATGGGGTTGGATCTGCCCTCTGGCGGTCATTTGACCCACGGGTACTACACTGCCGGAGGGAAGAAGATCTCTGCAACCTCGATTTATTTCGAGAGCTTGCCTTACAAGGTGAATTCAACTACTGGATACCTTGACTATGAAAAGCTGGAGGAGAAGGCCTTGGACTTCCGGCCCAAGTTGATCATTTGCGGTGGAAGTGCATACCCCCGGGACTGGGATTATGCGAGGTTCAGGGAGATCGCAGATAAGTGTGGTGCACTCTTGCTCTGTGATATGGCCCACATCAGTGGTCTTGTTGCTGCCCAGGAAGCGAACAACCCTTTTGAGTACTGTGACTTGGTCACGACAACAACTCACAAGAGCTTGAGGGGTCCTAGGGCAGGTATGATCTTCTACCGGAAAGGACCAAAACCACCCAAGAAGGGCCAGCCCGAGGGTGCAGTTTATGACTTTGAAGATAAGATCAATTTTGCTGTCTTCCCCTCCCTCCAGGGTGGTCCTCACAATCACCAGATTGGTGCTCTTGCTGTTGCCCTGAAACAAGCCATGTTACCTGGTTTCAAGGTCTATGCCAAACAAGTTAAGGCCAATTCAGTTGCTCTTGGAAACTTCTTGATGAGCAAGGGATACAAGCTTGTCACTGGAGGAACTGAGAATCATCTTGTCTTGTGGGATCTCAGGCCTCTTGGTTTGACCGGAAACAAGGTGGAGAAACTTTGTGACCTCTGCAACATCACCGTGAACAAGAATGCTGTTTTTGGTGACAGCAGTGCTTTGTCTCCTGGAGGAGTACGCATTGGTGCCCCAGCCATGACTTCAAGAGGGTTAGTTGAGAAGGACTTTGAACAGATTGGAGAGTTCCTTCACCGTGCGGTGACTCTGACACTGAAGATCCAGACCGAGCATGGCAAACTTTTGAAGGACTTCAACAAGGGCTTGGTAGACAACAAGGATATTGAAGCCCTCAAGGCCGATGTGGAGAAGTTTGCGGCCTCATTTGACATGCCCGGCTTCCTAGTTTCTGAGATGAAGTACAAGGATTAG 1416 0.5169 MDPVSVWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDEIENLCRSRALQAFHVDPAKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVNSTTGYLDYEKLEEKALDFRPKLIICGGSAYPRDWDYARFREIADKCGALLLCDMAHISGLVAAQEANNPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMLPGFKVYAKQVKANSVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALSPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLKIQTEHGKLLKDFNKGLVDNKDIEALKADVEKFAASFDMPGFLVSEMKYKD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1969 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Lele23g1969 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele23g1969 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 9 463 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele23g1969 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele23g1969 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Lele23g1969 471 SUPERFAMILY PLP-dependent transferases 5 463 IPR015424 -
Lele23g1969 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Lele23g1969 471 FunFam Serine hydroxymethyltransferase 41 316 - -
Lele23g1969 471 Gene3D - 41 316 IPR015421 GO:0003824
Lele23g1969 471 CDD SHMT 13 453 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lele23g1969 471 FunFam Serine hydroxymethyltransferase 304 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1969 Lele-ChrLele23 22600826 22603379 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1969 23 22600826 22603379 Lele23g1969 23 22600826 22603379 ECH
Lele21g0083 21 552609 555275 Lele23g1969 23 22600826 22603379 hybridization
Lele22g0087 22 510651 513265 Lele23g1969 23 22600826 22603379 hybridization