Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1947 ATGGCGAATCTGGTTAGTCCGATTCCCGTTCAGCATCTCCGCTTCAAGCGCGGCACAATAGCGAAACCTTGCAATCCCCTCTTCCTTAATCCCTTCCCTAAATTCCCTTCTCTACTCACTCAAATCCGTCTGTACCCTGTTCGTATCTCACCAACCGATACATTTTCACAAACTGCTTCCCTACAGCACAAAACCCTCCTTGTTGAGACTTACCATGAGCATCGCATCCTCAAATCCTTATTGCGAAAGCTTCAGAGGCAAGATTCAAGCCCTCTCCACATACTCGAACAAGATGGAGATTGGTCCAAAGACCAGTTCTGGTCCGTCGTCAGGTTTCTTAAACATGCCTCCAGATCCAAAGAAATCCTTCAGGTATTTGATATGTGGAAGAAAATTGAGGAATCACGGATTAATGAATTCAACTACGTCAAAATAATAAGTGTGCTGATTGAAGAAGAAATGATGGAAGAGGCAGTGGCTGCACTGCAGGAGATGAAAAATCATGGTCTCAAACCTTCTTTAGGTGCGTACAATCCAATAATTCATGGTTTCTCCATGGAAGGCAAATTCAGTGATGCTTTGTTTTTTCTAAGTGAGATGAAAGTATCCAGTGTGTTGCCGGACACTGAAACCTATGATAGTTTGATTCAGGGCTATGGGAAGTTTAAGATGTATGATGAGATGGGCTTGTGTGTGAAAAAGATGGAGTTGGATGGATGTTTTCTTGGTCAAACAACTTGTAACATAATTATAAGAGAATATTCTAGAGGTGGACTACTTCAGAGAATGGAATCAGTATATCAAAGAATGCTTTCCAAAAAAATGCATTTGCATTCTTCTACTTTGGTTGCAATGCTTGAGGCTTATGCCAGATTTGGGATAGTTTCAAAGATGGAAAAAGTTTATAGAAAACTTTTGGACTCAGAAATCCCTTTAAAGGATGATTTAATAAGAAAACTAGCAGATGTTTATATTGAGAATTATATGTATTCTAGGTTAGAAGATTTGGGGATTGATTTACGTTCGACTTTTGGTGGGACTGAACTTGTTTGGTGTCTGCGCCTCCTTTCTTATGCTTGTCTTTTGAGTCGAAAAGGCATGGATATCGTTGTTGGAGAAATGCAAGAAGCCAAAGTTCAATGGAATGTTACACTTTCTAATATTATAATGCTGGCTTATGTGAAGATGAATGATTTCAAGCACTTGAGAATGTTTCTTTCTCAATTGTCAACCTATGGAGTGAAGCCTGACATAGTCACTATTGGAATTATTTTTGATGCAACTAGAAAGGGTTTTGATGGCAGTGGAGCTTTGGAAAAATGGAGAAGGATGGGCTATCTTCATAGGGTTGTAGAAATGGAAACAGATTCTCTGGTCCTCACCGCGTTTGGGAAAGGTCATTTTCTTAAGACATGTGAAGAAGTGTACTCTTCTCTGCACCCGGAGGACAGAGAAAGAAAAACATGGACTTATGATGGCCTCGTTGATTTAGTATCTGAACATATTTAA 1509 0.397 MANLVSPIPVQHLRFKRGTIAKPCNPLFLNPFPKFPSLLTQIRLYPVRISPTDTFSQTASLQHKTLLVETYHEHRILKSLLRKLQRQDSSPLHILEQDGDWSKDQFWSVVRFLKHASRSKEILQVFDMWKKIEESRINEFNYVKIISVLIEEEMMEEAVAALQEMKNHGLKPSLGAYNPIIHGFSMEGKFSDALFFLSEMKVSSVLPDTETYDSLIQGYGKFKMYDEMGLCVKKMELDGCFLGQTTCNIIIREYSRGGLLQRMESVYQRMLSKKMHLHSSTLVAMLEAYARFGIVSKMEKVYRKLLDSEIPLKDDLIRKLADVYIENYMYSRLEDLGIDLRSTFGGTELVWCLRLLSYACLLSRKGMDIVVGEMQEAKVQWNVTLSNIIMLAYVKMNDFKHLRMFLSQLSTYGVKPDIVTIGIIFDATRKGFDGSGALEKWRRMGYLHRVVEMETDSLVLTAFGKGHFLKTCEEVYSSLHPEDRERKTWTYDGLVDLVSEHI 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1947 502 Gene3D Tetratricopeptide repeat domain 235 336 IPR011990 GO:0005515
Lele23g1947 502 Gene3D Tetratricopeptide repeat domain 68 234 IPR011990 GO:0005515
Lele23g1947 502 Gene3D Tetratricopeptide repeat domain 350 501 IPR011990 GO:0005515
Lele23g1947 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Lele23g1947 502 Pfam PPR repeat family 175 220 IPR002885 -
Lele23g1947 502 Pfam PPR repeat 246 273 IPR002885 -
Lele23g1947 502 Pfam PPR repeat 145 170 IPR002885 -
Lele23g1947 502 PANTHER OS08G0520200 PROTEIN 56 500 - -
Lele23g1947 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Lele23g1947 502 TIGRFAM PPR: pentatricopeptide repeat domain 142 173 IPR002885 -
Lele23g1947 502 TIGRFAM PPR: pentatricopeptide repeat domain 177 209 IPR002885 -
Lele23g1947 502 TIGRFAM PPR: pentatricopeptide repeat domain 246 275 IPR002885 -
Lele23g1947 502 TIGRFAM PPR: pentatricopeptide repeat domain 211 241 IPR002885 -
Lele23g1947 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Lele23g1947 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1947 Lele-ChrLele23 22485935 22487700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1947 128 444 Glycosyltransferase AT1G05670 21.118 2.22e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0103 21 661852 663629 Lele23g1947 23 22485935 22487700 hybridization
Lele22g0110 22 631382 632631 Lele23g1947 23 22485935 22487700 hybridization